Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI71_RS02130 Genome accession   NZ_CP139251
Coordinates   449486..450115 (-) Length   209 a.a.
NCBI ID   WP_104075311.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444486..455115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS02095 (SOI71_02095) mlaE 444816..445595 (+) 780 WP_049837392.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SOI71_RS02100 (SOI71_02100) - 445595..446275 (+) 681 WP_104075313.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SOI71_RS02105 (SOI71_02105) - 446302..446943 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  SOI71_RS02110 (SOI71_02110) - 446955..447242 (+) 288 WP_005078357.1 lipid asymmetry maintenance protein MlaB -
  SOI71_RS02115 (SOI71_02115) - 447315..448328 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  SOI71_RS02120 (SOI71_02120) - 448487..449068 (+) 582 WP_063097824.1 TIGR00730 family Rossman fold protein -
  SOI71_RS02125 (SOI71_02125) mutT 449083..449484 (+) 402 WP_104075312.1 NUDIX hydrolase -
  SOI71_RS02130 (SOI71_02130) comF 449486..450115 (-) 630 WP_104075311.1 ComF family protein Machinery gene
  SOI71_RS02135 (SOI71_02135) recG 450108..452153 (-) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  SOI71_RS02140 (SOI71_02140) - 452174..452989 (+) 816 WP_104075310.1 NAD-dependent epimerase/dehydratase family protein -
  SOI71_RS02145 (SOI71_02145) - 453069..454052 (+) 984 WP_025466709.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24561.72 Da        Isoelectric Point: 9.9486

>NTDB_id=908326 SOI71_RS02130 WP_104075311.1 449486..450115(-) (comF) [Acinetobacter pittii strain MCR53]
MFNFLNFKHLIQLFSPCSLCELETREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908326 SOI71_RS02130 WP_104075311.1 449486..450115(-) (comF) [Acinetobacter pittii strain MCR53]
ATGTTTAATTTTTTAAACTTCAAGCATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGAGACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCGACACCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823