Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI76_RS09940 Genome accession   NZ_CP139249
Coordinates   2090986..2091366 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain MCR8900     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2085986..2096366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS09910 (SOI76_09910) tadA 2086048..2086551 (-) 504 WP_104079548.1 tRNA adenosine(34) deaminase TadA -
  SOI76_RS09915 (SOI76_09915) hibch 2086557..2087681 (-) 1125 WP_104079547.1 enoyl-CoA hydratase/isomerase family protein -
  SOI76_RS09920 (SOI76_09920) ung 2087678..2088391 (-) 714 WP_032053803.1 uracil-DNA glycosylase -
  SOI76_RS09925 (SOI76_09925) - 2088445..2089041 (-) 597 WP_104079546.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI76_RS09930 (SOI76_09930) gspK 2089271..2090230 (-) 960 WP_104079545.1 type II secretion system minor pseudopilin GspK -
  SOI76_RS09935 (SOI76_09935) xcpW 2090231..2090986 (-) 756 WP_104079544.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI76_RS09940 (SOI76_09940) xcpV 2090986..2091366 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI76_RS09945 (SOI76_09945) - 2091356..2091907 (-) 552 WP_032053797.1 type II secretion system protein -
  SOI76_RS09950 (SOI76_09950) - 2091914..2092522 (-) 609 WP_016141197.1 TetR/AcrR family transcriptional regulator -
  SOI76_RS09955 (SOI76_09955) ycfH 2092559..2093332 (-) 774 WP_104079543.1 TatD family hydrolase -
  SOI76_RS09960 (SOI76_09960) pilZ 2093350..2093691 (-) 342 WP_104079542.1 PilZ domain-containing protein -
  SOI76_RS09965 (SOI76_09965) holB 2093702..2094682 (-) 981 WP_104079541.1 DNA polymerase III subunit delta' -
  SOI76_RS09970 (SOI76_09970) kdsB 2094696..2095457 (-) 762 WP_104079540.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=908293 SOI76_RS09940 WP_002121425.1 2090986..2091366(-) (xcpV) [Acinetobacter pittii strain MCR8900]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908293 SOI76_RS09940 WP_002121425.1 2090986..2091366(-) (xcpV) [Acinetobacter pittii strain MCR8900]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTGATGGTTGCTTTAGCAATTTTTGCAGTGGCAGCTGTCGCGCTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTACAAATTAGCTTGTATGATTCTGATAAGGG
TAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937