Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI76_RS02105 Genome accession   NZ_CP139249
Coordinates   449958..450587 (-) Length   209 a.a.
NCBI ID   WP_104079797.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444958..455587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS02070 (SOI76_02070) mlaE 445289..446065 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SOI76_RS02075 (SOI76_02075) - 446065..446748 (+) 684 WP_014207762.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SOI76_RS02080 (SOI76_02080) - 446774..447415 (+) 642 WP_032054643.1 phospholipid-binding protein MlaC -
  SOI76_RS02085 (SOI76_02085) - 447427..447714 (+) 288 WP_016142960.1 lipid asymmetry maintenance protein MlaB -
  SOI76_RS02090 (SOI76_02090) - 447787..448800 (-) 1014 WP_016142961.1 magnesium and cobalt transport protein CorA -
  SOI76_RS02095 (SOI76_02095) - 448959..449540 (+) 582 WP_104079796.1 TIGR00730 family Rossman fold protein -
  SOI76_RS02100 (SOI76_02100) mutT 449555..449956 (+) 402 WP_002116701.1 NUDIX hydrolase -
  SOI76_RS02105 (SOI76_02105) comF 449958..450587 (-) 630 WP_104079797.1 ComF family protein Machinery gene
  SOI76_RS02110 (SOI76_02110) recG 450580..452625 (-) 2046 WP_104079798.1 ATP-dependent DNA helicase RecG -
  SOI76_RS02115 (SOI76_02115) - 452646..453461 (+) 816 WP_104079799.1 NAD(P)H-binding protein -
  SOI76_RS02120 (SOI76_02120) - 453541..454524 (+) 984 WP_104079800.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24431.67 Da        Isoelectric Point: 9.9490

>NTDB_id=908284 SOI76_RS02105 WP_104079797.1 449958..450587(-) (comF) [Acinetobacter pittii strain MCR8900]
MFNFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNLSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKPLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908284 SOI76_RS02105 WP_104079797.1 449958..450587(-) (comF) [Acinetobacter pittii strain MCR8900]
ATGTTTAATTTTTTAAACTTCCAGCATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCTATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAGTCATTATTACTTGCCAATATCTTAAGTAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGTTTAAATGAGCACTCTCAAAAAGGACTTTCTCGACTGGAGCGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACTACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACCATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828