Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI69_RS17310 Genome accession   NZ_CP139248
Coordinates   3674044..3674673 (-) Length   209 a.a.
NCBI ID   WP_101664466.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669044..3679673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS17275 (SOI69_17275) mlaE 3669377..3670153 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SOI69_RS17280 (SOI69_17280) - 3670153..3670833 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SOI69_RS17285 (SOI69_17285) - 3670860..3671501 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  SOI69_RS17290 (SOI69_17290) - 3671513..3671800 (+) 288 WP_019767454.1 lipid asymmetry maintenance protein MlaB -
  SOI69_RS17295 (SOI69_17295) - 3671873..3672886 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  SOI69_RS17300 (SOI69_17300) - 3673045..3673626 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  SOI69_RS17305 (SOI69_17305) mutT 3673641..3674042 (+) 402 WP_017386994.1 NUDIX hydrolase -
  SOI69_RS17310 (SOI69_17310) comF 3674044..3674673 (-) 630 WP_101664466.1 ComF family protein Machinery gene
  SOI69_RS17315 (SOI69_17315) recG 3674666..3676711 (-) 2046 WP_320539702.1 ATP-dependent DNA helicase RecG -
  SOI69_RS17320 (SOI69_17320) - 3676732..3677547 (+) 816 WP_320539703.1 NAD-dependent epimerase/dehydratase family protein -
  SOI69_RS17325 (SOI69_17325) - 3677627..3678610 (+) 984 WP_002117028.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24547.69 Da        Isoelectric Point: 9.9486

>NTDB_id=908271 SOI69_RS17310 WP_101664466.1 3674044..3674673(-) (comF) [Acinetobacter pittii strain HCG18]
MFNFLNFKHLIQLFSPCSLCELDTREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908271 SOI69_RS17310 WP_101664466.1 3674044..3674673(-) (comF) [Acinetobacter pittii strain HCG18]
ATGTTTAATTTTTTAAATTTCAAGCATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGACACGCGAGAAAA
ATACTCACTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAATGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACACCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823