Detailed information NTG0908247

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SOI69_RS13525
• Genome accession: NZ_CP139248
• Coordinates: 2884567..2885427 (+)
• Length: 286 a.a.
• NCBI ID: WP_017481949.1
• Uniprot ID: A0A6S4VFF3
• Organism: Acinetobacter pittii strain HCG18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2879567..2890427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI69_RS13505 (SOI69_13505)	secG	2880174..2880503 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
SOI69_RS13510 (SOI69_13510)	tpiA	2880516..2881310 (-)	795	WP_320539477.1	triose-phosphate isomerase	-
SOI69_RS13515 (SOI69_13515)	pilB	2881602..2883314 (+)	1713	WP_017385371.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOI69_RS13520 (SOI69_13520)	pilC	2883341..2884567 (+)	1227	WP_017481950.1	type II secretion system F family protein	Machinery gene
SOI69_RS13525 (SOI69_13525)	pilD	2884567..2885427 (+)	861	WP_017481949.1	prepilin peptidase	Machinery gene
SOI69_RS13530 (SOI69_13530)	coaE	2885429..2886025 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
SOI69_RS13535 (SOI69_13535)	-	2886022..2886936 (-)	915	WP_005079347.1	DMT family transporter	-
SOI69_RS13540 (SOI69_13540)	rlmB	2886972..2887721 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SOI69_RS13545 (SOI69_13545)	-	2887824..2888150 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
SOI69_RS13550 (SOI69_13550)	-	2888227..2889537 (-)	1311	WP_320539478.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32119.62 Da
• Isoelectric Point: 6.4261

>NTDB_id=908247 SOI69_RS13525 WP_017481949.1 2884567..2885427(+) (pilD) [Acinetobacter pittii strain HCG18]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=908247 SOI69_RS13525 WP_017481949.1 2884567..2885427(+) (pilD) [Acinetobacter pittii strain HCG18]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A6S4VFF3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.846	95.455	0.514
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437