Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI69_RS06710 Genome accession   NZ_CP139248
Coordinates   1419302..1419682 (-) Length   126 a.a.
NCBI ID   WP_320540279.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414302..1424682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS06680 (SOI69_06680) tadA 1414305..1414808 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SOI69_RS06685 (SOI69_06685) hibch 1414814..1415938 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  SOI69_RS06690 (SOI69_06690) ung 1415935..1416648 (-) 714 WP_069119298.1 uracil-DNA glycosylase -
  SOI69_RS06695 (SOI69_06695) - 1416702..1417298 (-) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI69_RS06700 (SOI69_06700) gspK 1417527..1418486 (-) 960 WP_320124015.1 type II secretion system minor pseudopilin GspK -
  SOI69_RS06705 (SOI69_06705) xcpW 1418487..1419302 (-) 816 WP_320124016.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI69_RS06710 (SOI69_06710) xcpV 1419302..1419682 (-) 381 WP_320540279.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI69_RS06715 (SOI69_06715) - 1419672..1420226 (-) 555 WP_039761075.1 type II secretion system protein -
  SOI69_RS06720 (SOI69_06720) - 1420233..1420841 (-) 609 WP_014206595.1 TetR/AcrR family transcriptional regulator -
  SOI69_RS06725 (SOI69_06725) ycfH 1420878..1421651 (-) 774 WP_141315263.1 TatD family hydrolase -
  SOI69_RS06730 (SOI69_06730) pilZ 1421669..1422010 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI69_RS06735 (SOI69_06735) holB 1422021..1423001 (-) 981 WP_262461179.1 DNA polymerase III subunit delta' -
  SOI69_RS06740 (SOI69_06740) kdsB 1423015..1423776 (-) 762 WP_064784077.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14036.27 Da        Isoelectric Point: 9.4463

>NTDB_id=908232 SOI69_RS06710 WP_320540279.1 1419302..1419682(-) (xcpV) [Acinetobacter pittii strain HCG18]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDFDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908232 SOI69_RS06710 WP_320540279.1 1419302..1419682(-) (xcpV) [Acinetobacter pittii strain HCG18]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAAGAATGGCTTGAAGGTACTCAGAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTACAAATTAGCTTATATGATTTTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937