Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SH597_RS00050 Genome accession   NZ_CP139216
Coordinates   11463..12059 (+) Length   198 a.a.
NCBI ID   WP_194853709.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain A02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6463..17059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH597_RS00030 (SH597_00030) gyrA 6840..9461 (+) 2622 WP_003584054.1 DNA gyrase subunit A -
  SH597_RS00035 (SH597_00035) deoC 9566..10270 (-) 705 WP_194853708.1 deoxyribose-phosphate aldolase -
  SH597_RS00040 (SH597_00040) ssb 10577..11008 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  SH597_RS00045 (SH597_00045) rpsF 11136..11432 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  SH597_RS00050 (SH597_00050) ssb 11463..12059 (+) 597 WP_194853709.1 single-stranded DNA-binding protein Machinery gene
  SH597_RS00055 (SH597_00055) rpsR 12146..12382 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  SH597_RS00060 (SH597_00060) - 12824..14302 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  SH597_RS00065 (SH597_00065) cydB 14295..15314 (+) 1020 WP_194853710.1 cytochrome d ubiquinol oxidase subunit II -
  SH597_RS00070 (SH597_00070) - 15341..15535 (+) 195 WP_003568474.1 hypothetical protein -
  SH597_RS00075 (SH597_00075) - 15608..16201 (-) 594 WP_016387278.1 TMEM175 family protein -
  SH597_RS00080 (SH597_00080) - 16598..16882 (-) 285 Protein_15 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21196.91 Da        Isoelectric Point: 4.7278

>NTDB_id=908190 SH597_RS00050 WP_194853709.1 11463..12059(+) (ssb) [Lacticaseibacillus paracasei strain A02]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGDGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=908190 SH597_RS00050 WP_194853709.1 11463..12059(+) (ssb) [Lacticaseibacillus paracasei strain A02]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGACGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAGGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485