Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NC3_RS07890 Genome accession   NZ_AP025264
Coordinates   1553404..1554306 (+) Length   300 a.a.
NCBI ID   WP_236798056.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1548404..1559306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS07870 (NC3_15060) - 1549073..1550806 (+) 1734 WP_182489149.1 glycosyltransferase -
  NC3_RS07875 (NC3_15070) - 1550803..1551078 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  NC3_RS07880 (NC3_15080) sucC 1551255..1552415 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  NC3_RS07885 (NC3_15090) sucD 1552438..1553340 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NC3_RS07890 (NC3_15100) dprA 1553404..1554306 (+) 903 WP_236798056.1 DNA-processing protein DprA Machinery gene
  NC3_RS07895 (NC3_15110) topA 1554501..1556576 (+) 2076 WP_046526653.1 type I DNA topoisomerase -
  NC3_RS07900 (NC3_15120) trmFO 1556647..1557951 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NC3_RS07905 (NC3_15130) xerC 1558014..1558931 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34073.43 Da        Isoelectric Point: 8.2776

>NTDB_id=90819 NC3_RS07890 WP_236798056.1 1553404..1554306(+) (dprA) [Bacillus altitudinis strain NC3]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNITYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=90819 NC3_RS07890 WP_236798056.1 1553404..1554306(+) (dprA) [Bacillus altitudinis strain NC3]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CATTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCACCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCAATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

40.07

95.667

0.383
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38

Multiple sequence alignment