Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NC3_RS06630 Genome accession   NZ_AP025264
Coordinates   1307271..1309376 (-) Length   701 a.a.
NCBI ID   WP_236798045.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302271..1314376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS06605 (NC3_12520) - 1302513..1302755 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NC3_RS06610 (NC3_12530) - 1302807..1304306 (-) 1500 WP_008346092.1 ATP-binding protein -
  NC3_RS06615 (NC3_12540) - 1304511..1304966 (+) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  NC3_RS06620 (NC3_12550) motB 1305153..1305920 (-) 768 WP_019743067.1 flagellar motor protein MotB -
  NC3_RS06625 (NC3_12560) motA 1305913..1306707 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  NC3_RS06630 (NC3_12570) clpC 1307271..1309376 (-) 2106 WP_236798045.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NC3_RS06635 (NC3_12580) - 1309622..1310665 (+) 1044 WP_048003074.1 membrane protein -
  NC3_RS06640 (NC3_12590) queC 1310940..1311596 (+) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  NC3_RS06645 (NC3_12600) queD 1311597..1312037 (+) 441 WP_046527711.1 6-carboxytetrahydropterin synthase QueD -
  NC3_RS06650 (NC3_12610) queE 1312030..1312761 (+) 732 WP_024719652.1 7-carboxy-7-deazaguanine synthase QueE -
  NC3_RS06655 (NC3_12620) queF 1312777..1313274 (+) 498 WP_024426839.1 preQ(1) synthase -
  NC3_RS06660 (NC3_12630) - 1313672..1314034 (-) 363 WP_048001621.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78224.81 Da        Isoelectric Point: 5.1807

>NTDB_id=90815 NC3_RS06630 WP_236798045.1 1307271..1309376(-) (clpC) [Bacillus altitudinis strain NC3]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTFIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=90815 NC3_RS06630 WP_236798045.1 1307271..1309376(-) (clpC) [Bacillus altitudinis strain NC3]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACGATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAAGAACGGATGAAGCAATTAATTAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTTTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAGATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCTGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGCATTCAGGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATTGCCGCTGAAAAACAAGCCGCTTTAAATGAAGAACGCTATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTACAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACATAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAGTACATGGAG
AAACATTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACATTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCGGTCAAAGTCGGGTTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATCTTACTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.969

100

0.601
  clpE Streptococcus mutans UA159

56.51

100

0.601
  clpE Streptococcus pneumoniae Rx1

55.846

100

0.579
  clpE Streptococcus pneumoniae D39

55.846

100

0.579
  clpE Streptococcus pneumoniae R6

55.846

100

0.579
  clpE Streptococcus pneumoniae TIGR4

55.846

100

0.579
  clpC Bacillus subtilis subsp. subtilis str. 168

53.651

95.72

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.855

90.728

0.425
  clpC Streptococcus thermophilus LMD-9

44.427

92.154

0.409
  clpC Streptococcus thermophilus LMG 18311

44.272

92.154

0.408
  clpC Streptococcus pneumoniae TIGR4

44.479

90.442

0.402
  clpC Streptococcus pneumoniae Rx1

44.674

89.729

0.401
  clpC Streptococcus pneumoniae D39

44.674

89.729

0.401
  clpC Streptococcus mutans UA159

44.127

89.872

0.397

Multiple sequence alignment