Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SJN48_RS18580 Genome accession   NZ_CP139212
Coordinates   3914920..3916332 (+) Length   470 a.a.
NCBI ID   WP_130121613.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3909920..3921332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS18560 (SJN48_18610) thrC 3910168..3911307 (+) 1140 WP_002048893.1 threonine synthase -
  SJN48_RS18565 (SJN48_18615) pbpG 3911423..3912469 (-) 1047 WP_031946764.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SJN48_RS18570 (SJN48_18620) gacA 3912682..3913317 (+) 636 WP_002121174.1 response regulator -
  SJN48_RS18575 (SJN48_18625) pilS 3913328..3914896 (+) 1569 WP_213073498.1 PAS domain-containing sensor histidine kinase Regulator
  SJN48_RS18580 (SJN48_18630) pilR 3914920..3916332 (+) 1413 WP_130121613.1 sigma-54 dependent transcriptional regulator Regulator
  SJN48_RS18585 (SJN48_18635) ctpA 3916336..3917520 (-) 1185 WP_101664215.1 S41 family peptidase -
  SJN48_RS18590 (SJN48_18640) gpmI 3917536..3919083 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SJN48_RS18595 (SJN48_18645) lptG 3919210..3920280 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52641.69 Da        Isoelectric Point: 6.2340

>NTDB_id=908133 SJN48_RS18580 WP_130121613.1 3914920..3916332(+) (pilR) [Acinetobacter pittii strain WWTP]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYSHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHCLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCMEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPFRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=908133 SJN48_RS18580 WP_130121613.1 3914920..3916332(+) (pilR) [Acinetobacter pittii strain WWTP]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCCGACGGTAGTGGTTTAGAATTGGTCCAACATGTTTCTCAAACTTATTCTCACACCCCCATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTTAGTAAACC
GATTAACCAGATTCATTTAGATCAGCTATTAAAAAAAGCGCTTAACCAGCCAAAACCAGAGCATGAATTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCCGGTACGGGTAAAGAAGTTGTTGCGAATCTGATTCACTGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGCGGAGCAATCCCAACCGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCTGTACAAGAGAAAAAGATTCGCCCAGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAAGTTTGTATGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCACCTCCTTTTAGAGGCAGTAGTGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGTTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCGCTAAATATGACTCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTTCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.412

100

0.86
  pilR Pseudomonas aeruginosa PAK

51.198

97.66

0.5