Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SJN48_RS10910 Genome accession   NZ_CP139212
Coordinates   2330673..2331053 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain WWTP     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2325673..2336053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS10880 (SJN48_10915) tadA 2325736..2326239 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SJN48_RS10885 (SJN48_10920) hibch 2326245..2327369 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  SJN48_RS10890 (SJN48_10925) ung 2327366..2328079 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  SJN48_RS10895 (SJN48_10930) - 2328133..2328729 (-) 597 WP_039761085.1 6-carboxytetrahydropterin synthase -
  SJN48_RS10900 (SJN48_10935) gspK 2328958..2329917 (-) 960 WP_039761082.1 type II secretion system minor pseudopilin GspK -
  SJN48_RS10905 (SJN48_10940) xcpW 2329918..2330673 (-) 756 WP_039761079.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SJN48_RS10910 (SJN48_10945) xcpV 2330673..2331053 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  SJN48_RS10915 (SJN48_10950) - 2331043..2331597 (-) 555 WP_039761075.1 type II secretion system protein -
  SJN48_RS10920 (SJN48_10955) - 2331604..2332212 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  SJN48_RS10925 (SJN48_10960) ycfH 2332249..2333022 (-) 774 WP_005069538.1 TatD family hydrolase -
  SJN48_RS10930 (SJN48_10965) pilZ 2333040..2333381 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SJN48_RS10935 (SJN48_10970) holB 2333392..2334372 (-) 981 WP_039761071.1 DNA polymerase III subunit delta' -
  SJN48_RS10940 (SJN48_10975) kdsB 2334386..2335147 (-) 762 WP_039761068.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=908114 SJN48_RS10910 WP_002121425.1 2330673..2331053(-) (xcpV) [Acinetobacter pittii strain WWTP]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908114 SJN48_RS10910 WP_002121425.1 2330673..2331053(-) (xcpV) [Acinetobacter pittii strain WWTP]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937