Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SON02_RS07925 Genome accession   NZ_CP139211
Coordinates   1804591..1805592 (+) Length   333 a.a.
NCBI ID   WP_135029108.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799591..1810592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS07915 (SON02_07890) - 1801099..1802337 (-) 1239 WP_135029104.1 serine hydrolase -
  SON02_RS07920 (SON02_07895) oppA 1802551..1804338 (+) 1788 WP_135029106.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SON02_RS07925 (SON02_07900) oppD 1804591..1805592 (+) 1002 WP_135029108.1 ABC transporter ATP-binding protein Regulator
  SON02_RS07930 (SON02_07905) - 1805592..1806536 (+) 945 WP_135029110.1 ATP-binding cassette domain-containing protein -
  SON02_RS07935 (SON02_07910) opp4B 1806539..1807495 (+) 957 WP_135029112.1 oligopeptide ABC transporter permease -
  SON02_RS07940 (SON02_07915) - 1807507..1808409 (+) 903 WP_135029114.1 ABC transporter permease -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36587.67 Da        Isoelectric Point: 4.7473

>NTDB_id=908072 SON02_RS07925 WP_135029108.1 1804591..1805592(+) (oppD) [Streptococcus sp. LysM4]
MTNEKPLLEINDLHVGFRIGDEFYDAVDGVSIHLQKNEILAIVGESGCGKSTLATTIMGLHNPLNTKIQGAIQYKDKELV
GMSEAGYNKIRGNDIGMIFQDPLASLNPLMTIGAQIDEALYYHTDMNAEERTARVLELLDQVGIPNPKRTFKQYPHELSG
GMRQRIVIAIALSCKPPIIIADEPTTALDVTIQAQILDLLNEIQAETGSGIILITHDLGVVAETADRVAVMYGGQFVEVA
PVEELFTNPKHPYTRSLLKSNPQSSDEGGDLHVIDGTVPPLTKMPRTGCRFASRIPWIDAGAHEENPIMHEVSAGHFVRC
TCHETFYFEGETN

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=908072 SON02_RS07925 WP_135029108.1 1804591..1805592(+) (oppD) [Streptococcus sp. LysM4]
GTGACAAATGAAAAACCGCTTTTAGAGATTAATGATCTACACGTCGGTTTCCGTATTGGCGATGAATTTTATGATGCTGT
TGACGGTGTGTCCATTCATCTGCAAAAAAATGAAATTTTGGCGATTGTAGGGGAATCAGGATGTGGGAAGTCAACCTTGG
CGACAACGATTATGGGACTTCATAATCCATTAAATACAAAGATTCAAGGCGCAATTCAATACAAGGATAAAGAATTGGTT
GGAATGAGTGAAGCGGGTTACAATAAGATTCGTGGAAACGATATCGGGATGATTTTCCAAGACCCATTGGCTTCTTTGAA
TCCTTTGATGACCATTGGTGCACAAATCGATGAAGCGCTTTATTATCATACAGATATGAATGCAGAAGAGCGTACAGCTC
GTGTCTTGGAATTGCTGGATCAAGTCGGTATTCCAAATCCAAAACGCACCTTTAAACAATACCCGCATGAACTATCAGGC
GGTATGCGCCAACGGATCGTGATTGCTATTGCTTTGTCATGTAAACCACCGATTATTATTGCAGACGAACCCACAACTGC
TTTGGATGTGACGATTCAGGCTCAAATTTTGGACTTGTTAAATGAAATCCAAGCAGAGACTGGCTCAGGGATTATCTTGA
TTACACACGACCTCGGTGTGGTAGCAGAAACGGCTGACCGTGTAGCGGTCATGTATGGTGGCCAATTTGTGGAAGTAGCA
CCTGTTGAAGAGCTCTTTACCAATCCAAAACACCCATACACTCGTTCTTTATTGAAATCAAATCCACAATCAAGTGACGA
GGGTGGTGATTTGCATGTGATTGACGGAACTGTGCCACCATTGACAAAAATGCCTCGGACAGGTTGCCGTTTTGCATCAC
GTATTCCTTGGATTGATGCAGGTGCCCATGAAGAAAATCCAATCATGCATGAAGTATCAGCAGGTCATTTTGTACGCTGT
ACTTGTCATGAAACATTCTACTTTGAAGGAGAGACGAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(28-185)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(237-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

51.258

95.495

0.489
  amiE Streptococcus thermophilus LMG 18311

47.484

95.495

0.453
  amiE Streptococcus thermophilus LMD-9

47.484

95.495

0.453
  amiE Streptococcus salivarius strain HSISS4

46.855

95.495

0.447