Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SON02_RS07920 Genome accession   NZ_CP139211
Coordinates   1802551..1804338 (+) Length   595 a.a.
NCBI ID   WP_135029106.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797551..1809338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS07905 (SON02_07880) sufU 1798073..1798507 (+) 435 WP_135029100.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SON02_RS07910 (SON02_07885) sufB 1798556..1799968 (+) 1413 WP_135029102.1 Fe-S cluster assembly protein SufB -
  SON02_RS07915 (SON02_07890) - 1801099..1802337 (-) 1239 WP_135029104.1 serine hydrolase -
  SON02_RS07920 (SON02_07895) oppA 1802551..1804338 (+) 1788 WP_135029106.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SON02_RS07925 (SON02_07900) oppD 1804591..1805592 (+) 1002 WP_135029108.1 ABC transporter ATP-binding protein Regulator
  SON02_RS07930 (SON02_07905) - 1805592..1806536 (+) 945 WP_135029110.1 ATP-binding cassette domain-containing protein -
  SON02_RS07935 (SON02_07910) opp4B 1806539..1807495 (+) 957 WP_135029112.1 oligopeptide ABC transporter permease -
  SON02_RS07940 (SON02_07915) - 1807507..1808409 (+) 903 WP_135029114.1 ABC transporter permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65830.06 Da        Isoelectric Point: 4.5639

>NTDB_id=908071 SON02_RS07920 WP_135029106.1 1802551..1804338(+) (oppA) [Streptococcus sp. LysM4]
MKKSTKKLAFASVTLLSVATLVACGAKGSSNAANAELSFPTEVTHDGSVIKDGQFKYAVVSPAAATGLLIDELTQQLTDS
TFGSMVDNSMFGYDGNRKLDDSGLAKVDFDTKEKTITVSLTGKDYKWSDGKPFTIDDYLFTIEKMADKGYTGVRFDDKFT
NIVGMDEFVAGTADTISGIEKVDDYTAVLTVKEMEPSMMYAGGSVPAYVMPKHIFKDIPVADWEKSEYARATTKIVGMGP
FKVKEVVNGESITFEPNEYYFKGKPKVGLKMDIVSPDTIVSEMKAGHYDAAEMPVDQIDSYKDLSNVTLLGNLESSYEYL
SFNFGKYDEAAKKNVMNPDAKMSDVKLRQAMGYALDTKTAGEKLYNGLYHPANSLIISFFGELHDSDLEGFAYNPEKAKE
LLDEAGYKDVDGDGIREGKDGKAFKISLAARKRTEANEALVQQYLAWWKEIGLNVELYTGRTIEINSFYEMVQANDANID
AYLGGWSTGYDPMPNVWGPTNKFNMSRFVSEENSKLLEAIGSVESFDEKKNLENYKKWQENAFNEAFAIPLFESEAVTAV
NKRVKNWDTYYGSASKASATAWEKVELTADKGIAE

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=908071 SON02_RS07920 WP_135029106.1 1802551..1804338(+) (oppA) [Streptococcus sp. LysM4]
ATGAAGAAGTCTACCAAAAAGCTCGCTTTTGCAAGCGTGACATTGTTATCTGTGGCAACACTTGTAGCTTGCGGAGCGAA
AGGTTCATCAAATGCAGCAAATGCTGAGTTGAGTTTTCCTACTGAAGTTACCCATGACGGCTCCGTCATTAAGGATGGGC
AGTTTAAGTATGCAGTTGTATCACCAGCTGCTGCGACAGGTCTTCTGATTGATGAGTTAACCCAACAGCTTACCGATTCT
ACTTTTGGATCAATGGTTGATAACAGTATGTTTGGCTACGATGGAAACCGTAAGCTAGACGATTCAGGTCTTGCGAAAGT
AGACTTTGATACGAAAGAAAAGACCATTACAGTTAGCTTGACAGGCAAAGACTACAAGTGGTCAGACGGTAAGCCATTCA
CGATTGACGATTACCTCTTTACAATTGAAAAAATGGCGGATAAAGGCTATACGGGTGTCCGTTTTGACGACAAATTCACA
AATATCGTTGGCATGGACGAGTTTGTCGCAGGTACAGCAGATACAATCTCAGGTATTGAAAAAGTCGACGACTATACAGC
GGTTTTGACTGTAAAAGAAATGGAGCCATCTATGATGTATGCGGGTGGGTCTGTACCAGCTTATGTCATGCCAAAACACA
TCTTTAAAGATATCCCAGTAGCAGATTGGGAAAAGAGTGAGTATGCACGTGCGACAACAAAAATTGTCGGTATGGGACCA
TTCAAGGTCAAAGAAGTAGTCAATGGTGAGTCGATTACTTTTGAACCGAATGAGTACTACTTCAAGGGGAAACCAAAAGT
GGGCTTGAAGATGGACATCGTTTCTCCAGATACCATTGTATCAGAGATGAAAGCTGGCCACTATGATGCTGCAGAAATGC
CTGTAGACCAAATAGATTCTTACAAGGATTTATCTAATGTAACCCTTCTTGGTAATCTAGAGTCATCTTATGAATACCTT
TCATTTAACTTCGGTAAATATGATGAAGCAGCTAAGAAAAATGTCATGAATCCTGACGCTAAGATGAGTGATGTGAAGTT
GCGCCAAGCTATGGGATATGCTCTTGATACTAAGACTGCGGGAGAAAAACTCTATAATGGCTTATACCATCCAGCAAACT
CTCTGATTATCTCATTCTTTGGTGAACTCCACGATTCAGACTTGGAAGGTTTTGCTTACAATCCAGAAAAAGCAAAAGAA
TTGCTTGATGAAGCGGGCTACAAAGATGTAGATGGAGATGGTATCCGTGAAGGTAAAGATGGAAAAGCATTCAAGATTAG
CCTTGCTGCACGTAAACGTACAGAAGCAAACGAAGCTCTTGTACAACAGTACCTTGCTTGGTGGAAAGAAATTGGCTTGA
ACGTTGAGCTTTACACAGGTCGGACCATTGAGATAAACTCATTCTACGAAATGGTTCAGGCTAATGATGCAAATATTGAT
GCTTATCTTGGCGGCTGGTCGACTGGTTATGACCCAATGCCAAATGTGTGGGGACCTACGAATAAATTCAATATGTCACG
CTTTGTATCAGAAGAAAACAGTAAATTGCTTGAAGCGATTGGTTCTGTTGAATCATTCGATGAGAAGAAAAATCTTGAAA
ACTACAAGAAATGGCAAGAAAATGCCTTCAATGAAGCATTTGCTATCCCGTTATTTGAGTCAGAAGCTGTAACAGCGGTT
AATAAGCGTGTGAAAAATTGGGATACTTACTACGGTTCAGCTTCCAAAGCCTCAGCTACAGCTTGGGAAAAGGTTGAATT
GACTGCTGATAAAGGCATTGCGGAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(111-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

74.329

100

0.745