Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SON02_RS06235 Genome accession   NZ_CP139211
Coordinates   1419128..1419892 (-) Length   254 a.a.
NCBI ID   WP_135027834.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414128..1424892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS06210 (SON02_06195) - 1414341..1414673 (-) 333 WP_135027850.1 helix-turn-helix domain-containing protein -
  SON02_RS06215 (SON02_06200) - 1414781..1414990 (-) 210 WP_135027847.1 DUF951 domain-containing protein -
  SON02_RS06220 (SON02_06205) - 1414993..1415901 (-) 909 WP_135027844.1 diacylglycerol/lipid kinase family protein -
  SON02_RS06225 (SON02_06210) dnaN 1416283..1417419 (-) 1137 WP_135027841.1 DNA polymerase III subunit beta -
  SON02_RS06230 (SON02_06215) dnaA 1417568..1418926 (-) 1359 WP_135027837.1 chromosomal replication initiator protein DnaA -
  SON02_RS06235 (SON02_06220) spo0J 1419128..1419892 (-) 765 WP_135027834.1 ParB/RepB/Spo0J family partition protein Regulator
  SON02_RS06240 (SON02_06225) htrA 1419948..1421147 (-) 1200 WP_135027832.1 S1C family serine protease Regulator
  SON02_RS06245 (SON02_06230) rlmH 1421322..1421801 (+) 480 WP_135027828.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SON02_RS06250 (SON02_06235) - 1421826..1422497 (+) 672 WP_135027825.1 YoaK family protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28901.25 Da        Isoelectric Point: 6.8825

>NTDB_id=908062 SON02_RS06235 WP_135027834.1 1419128..1419892(-) (spo0J) [Streptococcus sp. LysM4]
MEELRYIAITDISPNPYQPRIYFDQERLEELAQSIRENGLIQPLIVRKSAIIGYELLAGERRLRASQLAGLTKVPVVIKD
LSDDELLSQAIIENLQRSDLNPIEEATSYQRLIEKGLTHDEIAQIMGKSRPYITNILRLLQLSDTLIQAVKEGKLSQGHA
RLLLSFNAREQEQWLHTILEKEMSVRALETALSTKKTKKSQPSKNLFVKEAEETICQLLGTAVQIQQKKNGSGNLTISFK
NAEEFERIIHTIIN

Nucleotide


Download         Length: 765 bp        

>NTDB_id=908062 SON02_RS06235 WP_135027834.1 1419128..1419892(-) (spo0J) [Streptococcus sp. LysM4]
ATGGAAGAACTACGTTATATTGCAATCACTGACATCAGCCCAAACCCTTATCAGCCACGAATTTATTTTGACCAAGAAAG
GTTAGAAGAACTGGCTCAGTCTATCAGAGAAAACGGTCTAATTCAGCCTTTAATTGTCCGAAAATCAGCCATTATCGGTT
ACGAATTACTGGCAGGTGAAAGGAGACTGCGGGCCAGCCAATTAGCTGGTCTGACTAAGGTTCCTGTGGTTATCAAAGAC
CTATCTGATGATGAATTACTTTCCCAAGCCATTATTGAAAACCTACAACGCTCTGATCTGAACCCGATTGAGGAAGCGAC
ATCCTATCAACGACTAATTGAAAAAGGCTTAACGCACGATGAAATTGCACAAATCATGGGCAAATCGCGGCCTTATATCA
CCAATATTCTACGCTTATTACAACTATCTGACACCTTGATTCAAGCAGTAAAAGAGGGAAAACTATCACAAGGGCACGCT
AGATTATTGCTTTCTTTTAATGCAAGAGAGCAGGAGCAATGGCTTCATACCATTTTGGAAAAAGAGATGAGCGTCCGTGC
CTTAGAAACTGCCTTATCAACCAAGAAAACCAAAAAGAGTCAACCTAGCAAAAATCTTTTTGTTAAAGAAGCAGAAGAAA
CTATCTGTCAACTCTTAGGAACAGCTGTCCAAATTCAACAGAAAAAAAATGGTAGTGGTAATCTAACTATTTCATTTAAA
AACGCAGAAGAATTTGAACGAATTATCCACACCATTATAAACTAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(147-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.545

99.606

0.543