Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SON02_RS03750 Genome accession   NZ_CP139211
Coordinates   883335..884027 (-) Length   230 a.a.
NCBI ID   WP_135028881.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 878335..889027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS03740 (SON02_03735) - 878755..880284 (-) 1530 WP_135028885.1 hypothetical protein -
  SON02_RS03745 (SON02_03740) - 881228..882340 (-) 1113 WP_135028883.1 AI-2E family transporter -
  SON02_RS03750 (SON02_03745) covR 883335..884027 (-) 693 WP_135028881.1 DNA-binding response regulator Regulator
  SON02_RS03755 (SON02_03750) gndA 884031..885455 (-) 1425 WP_135028879.1 NADP-dependent phosphogluconate dehydrogenase -
  SON02_RS03760 (SON02_03755) - 885543..886079 (-) 537 WP_135028877.1 YceD family protein -
  SON02_RS03765 (SON02_03760) trxB 886090..887007 (-) 918 WP_135028875.1 thioredoxin-disulfide reductase -
  SON02_RS03770 (SON02_03765) - 887023..887247 (-) 225 WP_135028873.1 DUF4059 family protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26681.68 Da        Isoelectric Point: 6.1397

>NTDB_id=908047 SON02_RS03750 WP_135028881.1 883335..884027(-) (covR) [Streptococcus sp. LysM4]
MVKKILIAGRERNLSHFVSMELQKKDYLVDYTSTGKEALQLAHETDFDLILMSFRLSDMSSHELATELIKMKPTTVMIVV
VDSEDVEKYGADIQRYAVSYIIKPFIISDLVEQVTSIFRGRDYIDEHCKQVKLQAAYRDLKIDFQNRTVTRGSELITLTR
REYDLLATLMNSQETLTREQLLDRVWKYEATAGTNVVDVYIRYLRGKLDLPGQESYIKTVRGVGYAMREE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=908047 SON02_RS03750 WP_135028881.1 883335..884027(-) (covR) [Streptococcus sp. LysM4]
ATGGTAAAAAAAATCTTAATTGCAGGTCGTGAGCGTAATCTATCTCATTTTGTGTCCATGGAGTTGCAAAAAAAAGACTA
TTTAGTCGACTATACTTCTACGGGAAAAGAAGCGCTCCAACTTGCCCATGAGACAGATTTTGATTTGATTCTTATGAGCT
TTCGTCTGTCAGACATGTCTAGCCATGAATTAGCAACAGAATTGATCAAAATGAAGCCGACTACAGTCATGATTGTGGTC
GTTGATAGTGAGGATGTAGAAAAGTATGGTGCGGATATCCAACGTTACGCCGTTTCTTACATCATCAAACCTTTTATCAT
CAGTGATTTGGTTGAACAGGTGACCTCTATTTTTAGAGGACGGGATTATATTGATGAGCATTGCAAGCAGGTTAAACTTC
AAGCTGCCTATCGGGATTTGAAGATTGATTTTCAAAATCGGACAGTCACTCGTGGTTCGGAGTTGATAACCTTGACCCGC
AGAGAATATGACCTCCTTGCGACCTTGATGAATAGTCAAGAAACCTTGACCCGAGAACAACTCTTAGACCGGGTTTGGAA
GTACGAAGCTACGGCTGGGACCAATGTTGTAGATGTTTATATTCGTTACCTGCGTGGGAAACTAGACCTACCAGGTCAAG
AATCCTATATCAAAACCGTCCGCGGTGTGGGCTATGCCATGCGGGAGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.707

100

0.491
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.852

99.565

0.457