Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SON02_RS03555 Genome accession   NZ_CP139211
Coordinates   842314..843279 (-) Length   321 a.a.
NCBI ID   WP_135028670.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837314..848279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS03540 (SON02_03535) - 838760..839383 (+) 624 WP_135028673.1 ATP-binding cassette domain-containing protein -
  SON02_RS03545 (SON02_03540) - 839380..839883 (+) 504 WP_135028672.1 hypothetical protein -
  SON02_RS03550 (SON02_03545) pepF 840462..842264 (-) 1803 WP_135028671.1 oligoendopeptidase F Regulator
  SON02_RS03555 (SON02_03550) coiA 842314..843279 (-) 966 WP_135028670.1 competence protein CoiA Machinery gene
  SON02_RS03560 (SON02_03555) metG 843875..845878 (-) 2004 WP_135028669.1 methionine--tRNA ligase -
  SON02_RS03565 (SON02_03560) - 846634..847266 (-) 633 WP_135028668.1 DUF421 domain-containing protein -
  SON02_RS03570 (SON02_03565) - 847263..847715 (-) 453 WP_135028667.1 DUF3290 family protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 37951.91 Da        Isoelectric Point: 9.5861

>NTDB_id=908046 SON02_RS03555 WP_135028670.1 842314..843279(-) (coiA) [Streptococcus sp. LysM4]
MLVAKNEQGQSICLVKQQAVGGKKFFCPGCGGPVRLRKGQVIRPHFAHISLKHCRYFSENESAQHLALKTSVYQWARKHN
KVELEKWLPEIEQIADLLVEERLALEIQCSSLSFKRLQERTHAYQQAGYRVLWLLGEQLWLKNRLTKLQKQFLSFSQYMG
FFVWELDLKCQRLHLRYLIHEDLHGRLQCLTEEFPLGVGNLLTILRFPYQKKKVAVLKGRQDVQLLDYIARQLYHHSPKW
MAAQAQLYQKGGNLLMQHLDDFYPQIRPPQSRCGFVQIQEDLTDYYANFQTYYQQLNHKDEQYLYSPVFYQTILKKNSTP
N

Nucleotide


Download         Length: 966 bp        

>NTDB_id=908046 SON02_RS03555 WP_135028670.1 842314..843279(-) (coiA) [Streptococcus sp. LysM4]
ATGTTAGTTGCGAAAAACGAGCAAGGACAGTCGATTTGTTTAGTGAAACAGCAGGCAGTAGGAGGAAAAAAATTTTTTTG
TCCAGGGTGTGGCGGACCTGTTCGTCTGCGCAAAGGACAGGTGATACGACCACATTTTGCGCATATTTCTTTAAAACATT
GTCGTTATTTCTCAGAAAATGAATCTGCTCAACATCTTGCATTGAAAACAAGTGTGTATCAATGGGCTCGTAAACATAAC
AAGGTGGAGCTGGAAAAATGGTTGCCCGAGATTGAGCAGATTGCAGATCTATTGGTGGAGGAGCGGCTTGCGCTGGAAAT
TCAATGTTCGAGTTTATCTTTCAAGCGTTTGCAAGAACGGACCCATGCCTATCAGCAGGCGGGCTACCGTGTGCTATGGC
TTTTAGGTGAGCAGTTGTGGTTGAAAAATCGTCTCACCAAATTACAAAAGCAGTTCCTCTCTTTTAGCCAATATATGGGC
TTTTTCGTCTGGGAGTTGGATTTAAAATGCCAGAGATTACACCTGCGCTACTTGATTCATGAGGATTTACATGGTCGTTT
GCAATGTCTGACGGAAGAATTTCCCCTCGGAGTTGGAAATCTTCTTACGATTTTGCGTTTTCCTTATCAAAAGAAAAAAG
TAGCTGTTTTAAAGGGGAGGCAAGATGTACAGTTACTTGACTATATTGCGCGCCAACTCTATCATCACTCCCCGAAGTGG
ATGGCAGCTCAAGCTCAGCTGTATCAGAAAGGAGGAAATCTCCTCATGCAACACCTGGATGATTTTTATCCTCAAATTCG
TCCGCCCCAGTCTAGATGTGGTTTTGTCCAAATCCAAGAGGATTTAACGGACTATTATGCTAACTTTCAAACCTATTACC
AGCAATTAAACCACAAAGACGAGCAGTATCTTTATTCACCTGTTTTCTATCAGACAATTCTCAAGAAAAATTCTACCCCA
AATTAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.473

98.754

0.498
  coiA Streptococcus pneumoniae Rx1

49.527

98.754

0.489
  coiA Streptococcus pneumoniae D39

49.527

98.754

0.489
  coiA Streptococcus pneumoniae R6

49.527

98.754

0.489
  coiA Streptococcus pneumoniae TIGR4

49.211

98.754

0.486
  coiA Lactococcus lactis subsp. cremoris KW2

42.683

100

0.436