Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SON02_RS03550 Genome accession   NZ_CP139211
Coordinates   840462..842264 (-) Length   600 a.a.
NCBI ID   WP_135028671.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 835462..847264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS03530 (SON02_03525) - 836474..836716 (+) 243 WP_135028675.1 hypothetical protein -
  SON02_RS03535 (SON02_03530) - 836781..838763 (+) 1983 WP_135028674.1 ABC transporter permease -
  SON02_RS03540 (SON02_03535) - 838760..839383 (+) 624 WP_135028673.1 ATP-binding cassette domain-containing protein -
  SON02_RS03545 (SON02_03540) - 839380..839883 (+) 504 WP_135028672.1 hypothetical protein -
  SON02_RS03550 (SON02_03545) pepF 840462..842264 (-) 1803 WP_135028671.1 oligoendopeptidase F Regulator
  SON02_RS03555 (SON02_03550) coiA 842314..843279 (-) 966 WP_135028670.1 competence protein CoiA Machinery gene
  SON02_RS03560 (SON02_03555) metG 843875..845878 (-) 2004 WP_135028669.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69090.22 Da        Isoelectric Point: 4.6394

>NTDB_id=908045 SON02_RS03550 WP_135028671.1 840462..842264(-) (pepF) [Streptococcus sp. LysM4]
MIKQRNEIDEKYQWDLTTIFPTDEAWEAELAALQADVEATAGLAGHLLDSAKNLLEISERQLTLMRRMETVYVYASMKND
QDTREGKYQEFQAKALGLYSALSQAFAFYKSEFLVVTEEQLAAFMEEEPALKQYSHQFEKLLAEKEHVLSQEVEEVLAAT
SEIFDAPSETFAVLDNASIRFPEITDEEGNLVPLSHGSYISFMESSNRELRKEAYEALYDTYHQFQHTYAKTLQSNVKVN
NLKARLRKYGSARHAALAENFIPESVYDTLIEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDVDYKLTYGDALE
KAADTLTIFGDEYSIQVKEAFENRWIDVHENDGKRSGAYSGGAYDTNAFMLLNWQDTLDNLYTLIHETGHSLHSMFTRKN
QPYVYGHYSIFLAEIASTTNENLLTEKLLSEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYQSDQDGEVLTADF
LNHLYAEINEKYYGLSAEENPHIQFEWARIPHFYYNFYVYQYATGFAAASALSHRIVHGSPEDKEHYLAYLKAGSSDYPL
NVIKKAGVDMTKEDYLNDAFKVFEARLTELESLVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=908045 SON02_RS03550 WP_135028671.1 840462..842264(-) (pepF) [Streptococcus sp. LysM4]
ATGATAAAACAACGAAATGAAATTGATGAAAAATACCAGTGGGATTTGACCACGATTTTTCCAACAGATGAAGCCTGGGA
AGCAGAACTTGCAGCCCTTCAAGCAGATGTGGAGGCGACTGCTGGTTTGGCGGGTCACTTGCTCGATTCTGCTAAGAATT
TATTAGAAATTAGCGAAAGGCAACTCACTCTCATGCGTCGCATGGAAACAGTATATGTTTATGCTTCCATGAAAAACGAC
CAAGATACTCGTGAAGGCAAGTACCAAGAATTTCAAGCTAAAGCTTTGGGCTTGTATTCAGCCCTTTCACAAGCCTTTGC
TTTCTACAAGTCAGAATTTTTAGTCGTAACAGAGGAGCAGTTGGCAGCTTTTATGGAAGAAGAGCCAGCCTTGAAGCAGT
ACAGCCACCAGTTTGAGAAATTATTGGCGGAAAAAGAGCATGTCTTATCACAAGAAGTTGAAGAGGTGCTGGCAGCCACT
AGCGAAATCTTTGATGCACCGTCAGAGACTTTTGCTGTTCTTGATAATGCAAGTATTCGTTTTCCAGAAATCACCGATGA
AGAGGGGAATCTTGTGCCACTTTCACACGGTAGCTACATTTCATTTATGGAATCAAGCAACCGTGAGTTACGCAAGGAAG
CTTATGAAGCCTTGTATGATACGTATCATCAGTTCCAGCATACCTATGCTAAGACCTTGCAATCAAATGTCAAAGTTAAT
AACCTAAAAGCTCGTTTGCGGAAGTATGGTAGTGCCCGCCATGCAGCTTTGGCTGAAAATTTTATTCCAGAGTCTGTCTA
CGATACGTTGATAGAAGCCGTTAACAAGCACTTGCCACTTTTACATCGCTATATCAATCTACGGAAGAAATTGCTCGGTA
TTGATGATTTGAAGATGTATGATATGTACACACCTCTTTCTGATGTGGACTACAAGCTCACCTATGGAGATGCATTGGAA
AAGGCAGCAGATACCTTGACTATTTTTGGCGATGAGTACAGCATACAGGTGAAAGAAGCGTTTGAAAACCGTTGGATTGA
TGTACATGAAAATGACGGAAAACGTTCTGGAGCTTATTCAGGTGGTGCCTATGACACCAATGCTTTCATGCTGTTGAACT
GGCAGGATACACTGGATAATCTCTACACTCTTATCCATGAAACAGGCCATTCGCTTCACTCCATGTTTACCCGTAAAAAT
CAGCCCTATGTCTATGGACATTATTCTATTTTTTTGGCAGAGATTGCTTCTACGACCAATGAAAATCTGTTGACGGAAAA
ATTATTGTCAGAAGTGGAAGATGACAAGACTCGCTTTGCTATTTTGAACCATTACTTGGATGGTTTCCGTGGTACAGTAT
TCCGTCAGACCCAGTTTGCTGAGTTTGAGCAGGCAATCTATCAGTCAGACCAAGACGGAGAAGTATTGACAGCTGATTTC
TTAAATCATTTGTATGCAGAAATCAATGAGAAATACTATGGCTTATCTGCTGAAGAAAATCCACATATTCAATTTGAATG
GGCGCGGATTCCGCACTTCTATTATAATTTTTATGTCTATCAATATGCGACAGGTTTTGCTGCAGCGTCTGCCCTTTCTC
ATAGGATTGTTCATGGAAGTCCAGAAGATAAGGAACATTACCTTGCTTATCTGAAAGCAGGTAGTTCAGACTATCCGCTT
AATGTAATCAAAAAAGCAGGTGTAGATATGACCAAGGAAGACTACTTAAACGACGCTTTCAAGGTCTTTGAAGCCCGATT
GACAGAGCTAGAAAGTTTGGTAGAAAAAGGGGTTCATTTGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.667

100

0.687