Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SLQ83_RS17630 Genome accession   NZ_CP139208
Coordinates   3661249..3662670 (+) Length   473 a.a.
NCBI ID   WP_000840559.1    Uniprot ID   D0CB63
Organism   Acinetobacter baumannii strain HNNY86G     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3656249..3667670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS17610 (SLQ83_17610) thrC 3656504..3657643 (+) 1140 WP_000063594.1 threonine synthase -
  SLQ83_RS17615 (SLQ83_17615) pbpG 3657752..3658798 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SLQ83_RS17620 (SLQ83_17620) - 3659011..3659646 (+) 636 WP_000633799.1 response regulator -
  SLQ83_RS17625 (SLQ83_17625) pilS 3659657..3661225 (+) 1569 WP_001160331.1 PAS domain-containing sensor histidine kinase Regulator
  SLQ83_RS17630 (SLQ83_17630) pilR 3661249..3662670 (+) 1422 WP_000840559.1 sigma-54 dependent transcriptional regulator Regulator
  SLQ83_RS17635 (SLQ83_17635) - 3662674..3663858 (-) 1185 WP_000939110.1 S41 family peptidase -
  SLQ83_RS17640 (SLQ83_17640) gpmI 3663874..3665421 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SLQ83_RS17645 (SLQ83_17645) lptG 3665547..3666617 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53138.28 Da        Isoelectric Point: 6.5602

>NTDB_id=907982 SLQ83_RS17630 WP_000840559.1 3661249..3662670(+) (pilR) [Acinetobacter baumannii strain HNNY86G]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDATENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERDEDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFTSATQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=907982 SLQ83_RS17630 WP_000840559.1 3661249..3662670(+) (pilR) [Acinetobacter baumannii strain HNNY86G]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGACTTAGTCAAACATGTCTCTCAAAATTATCCCAACACTCCGATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATGCTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCGGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCCACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTCTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTAGTTCGACAGGGCAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGACGAAGATGTCCTTTTG
CTTGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGACG
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTACTTCGGCTACTCAAAGC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACTTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0CB63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.943

100

0.989
  pilR Pseudomonas aeruginosa PAK

51.198

97.04

0.497