Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SLQ83_RS10420 Genome accession   NZ_CP139208
Coordinates   2161406..2161786 (-) Length   126 a.a.
NCBI ID   WP_042050087.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNNY86G     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2156406..2166786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS10390 (SLQ83_10390) tadA 2156525..2157028 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  SLQ83_RS10395 (SLQ83_10395) - 2157035..2158159 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  SLQ83_RS10400 (SLQ83_10400) ung 2158156..2158869 (-) 714 WP_042050084.1 uracil-DNA glycosylase -
  SLQ83_RS10405 (SLQ83_10405) - 2158920..2159516 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  SLQ83_RS10410 (SLQ83_10410) gspK 2159746..2160705 (-) 960 WP_000301461.1 type II secretion system minor pseudopilin GspK -
  SLQ83_RS10415 (SLQ83_10415) xcpW 2160705..2161406 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SLQ83_RS10420 (SLQ83_10420) xcpV 2161406..2161786 (-) 381 WP_042050087.1 type II secretion system minor pseudopilin GspI Machinery gene
  SLQ83_RS10425 (SLQ83_10425) - 2161776..2162330 (-) 555 WP_000841373.1 type II secretion system protein -
  SLQ83_RS10430 (SLQ83_10430) - 2162340..2162948 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  SLQ83_RS10435 (SLQ83_10435) - 2162986..2163759 (-) 774 WP_000497298.1 TatD family hydrolase -
  SLQ83_RS10440 (SLQ83_10440) - 2163777..2164118 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  SLQ83_RS10445 (SLQ83_10445) - 2164130..2165110 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  SLQ83_RS10450 (SLQ83_10450) kdsB 2165122..2165883 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=907963 SLQ83_RS10420 WP_042050087.1 2161406..2161786(-) (xcpV) [Acinetobacter baumannii strain HNNY86G]
MKSKGFTLLEVIVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=907963 SLQ83_RS10420 WP_042050087.1 2161406..2161786(-) (xcpV) [Acinetobacter baumannii strain HNNY86G]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATCGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992