Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SLP98_RS16120 Genome accession   NZ_CP139204
Coordinates   3433050..3433523 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3428050..3438523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS16105 (SLP98_16105) pilX 3430679..3431497 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SLP98_RS16110 (SLP98_16110) pilW 3431494..3432495 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  SLP98_RS16115 (SLP98_16115) pilV 3432496..3433056 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  SLP98_RS16120 (SLP98_16120) fimU 3433050..3433523 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SLP98_RS16125 (SLP98_16125) ispH 3433693..3434643 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SLP98_RS16130 (SLP98_16130) gmk 3434766..3435395 (+) 630 WP_000015937.1 guanylate kinase -
  SLP98_RS16135 (SLP98_16135) rpoZ 3435468..3435746 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SLP98_RS16140 (SLP98_16140) - 3435785..3435915 (+) 131 Protein_3138 hypothetical protein -
  SLP98_RS16145 (SLP98_16145) - 3435955..3438060 (+) 2106 WP_020753492.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=907932 SLP98_RS16120 WP_001214068.1 3433050..3433523(-) (fimU) [Acinetobacter baumannii strain HNZZ130D]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=907932 SLP98_RS16120 WP_001214068.1 3433050..3433523(-) (fimU) [Acinetobacter baumannii strain HNZZ130D]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCCGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994