Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SLP98_RS16110 Genome accession   NZ_CP139204
Coordinates   3431494..3432495 (-) Length   333 a.a.
NCBI ID   WP_000079199.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3426494..3437495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS16100 (SLP98_16100) pilY1 3426813..3430667 (-) 3855 WP_020753491.1 PilC/PilY family type IV pilus protein Machinery gene
  SLP98_RS16105 (SLP98_16105) pilX 3430679..3431497 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SLP98_RS16110 (SLP98_16110) pilW 3431494..3432495 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  SLP98_RS16115 (SLP98_16115) pilV 3432496..3433056 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  SLP98_RS16120 (SLP98_16120) fimU 3433050..3433523 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SLP98_RS16125 (SLP98_16125) ispH 3433693..3434643 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SLP98_RS16130 (SLP98_16130) gmk 3434766..3435395 (+) 630 WP_000015937.1 guanylate kinase -
  SLP98_RS16135 (SLP98_16135) rpoZ 3435468..3435746 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SLP98_RS16140 (SLP98_16140) - 3435785..3435915 (+) 131 Protein_3138 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35899.59 Da        Isoelectric Point: 6.3350

>NTDB_id=907930 SLP98_RS16110 WP_000079199.1 3431494..3432495(-) (pilW) [Acinetobacter baumannii strain HNZZ130D]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPTVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQHVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=907930 SLP98_RS16110 WP_000079199.1 3431494..3432495(-) (pilW) [Acinetobacter baumannii strain HNZZ130D]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCTAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAACTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGCATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988