Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SLP98_RS16095 Genome accession   NZ_CP139204
Coordinates   3426318..3426800 (-) Length   160 a.a.
NCBI ID   WP_001046421.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3421318..3431800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS16060 (SLP98_16060) - 3421426..3422460 (+) 1035 WP_001189446.1 lipase secretion chaperone -
  SLP98_RS16065 (SLP98_16065) - 3422575..3423516 (+) 942 WP_085916958.1 triacylglycerol lipase -
  SLP98_RS16070 (SLP98_16070) rplS 3423568..3423936 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  SLP98_RS16075 (SLP98_16075) trmD 3424144..3424884 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SLP98_RS16080 (SLP98_16080) rimM 3424930..3425478 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  SLP98_RS16085 (SLP98_16085) rpsP 3425498..3425749 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  SLP98_RS16090 (SLP98_16090) pilE 3425896..3426321 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  SLP98_RS16095 (SLP98_16095) pilY2 3426318..3426800 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  SLP98_RS16100 (SLP98_16100) pilY1 3426813..3430667 (-) 3855 WP_020753491.1 PilC/PilY family type IV pilus protein Machinery gene
  SLP98_RS16105 (SLP98_16105) pilX 3430679..3431497 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17563.78 Da        Isoelectric Point: 8.4834

>NTDB_id=907927 SLP98_RS16095 WP_001046421.1 3426318..3426800(-) (pilY2) [Acinetobacter baumannii strain HNZZ130D]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=907927 SLP98_RS16095 WP_001046421.1 3426318..3426800(-) (pilY2) [Acinetobacter baumannii strain HNZZ130D]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419