Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   TM2_RS16305 Genome accession   NZ_AP025262
Coordinates   3146709..3148088 (-) Length   459 a.a.
NCBI ID   WP_419465672.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3141709..3153088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS16270 (TM2_31680) flgL 3141892..3142803 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  TM2_RS16275 (TM2_31690) flgK 3142812..3144332 (-) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  TM2_RS16280 (TM2_31700) - 3144348..3144830 (-) 483 WP_007499977.1 flagellar protein FlgN -
  TM2_RS16285 (TM2_31710) flgM 3144849..3145112 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  TM2_RS16290 (TM2_31720) - 3145192..3145611 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  TM2_RS16295 (TM2_31730) - 3145668..3146390 (-) 723 WP_419465664.1 ComF family protein -
  TM2_RS16300 (TM2_31740) - 3146351..3146644 (-) 294 WP_099496873.1 late competence development ComFB family protein -
  TM2_RS16305 (TM2_31750) comFA 3146709..3148088 (-) 1380 WP_419465672.1 DEAD/DEAH box helicase Machinery gene
  TM2_RS16310 (TM2_31760) - 3148208..3149050 (-) 843 WP_024719242.1 DegV family protein -
  TM2_RS16315 (TM2_31770) degU 3149262..3149951 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  TM2_RS16320 (TM2_31780) degS 3150016..3151191 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  TM2_RS16325 (TM2_31790) - 3151413..3152081 (+) 669 WP_236810098.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52482.08 Da        Isoelectric Point: 9.9663

>NTDB_id=90785 TM2_RS16305 WP_419465672.1 3146709..3148088(-) (comFA) [Bacillus altitudinis strain TM2]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=90785 TM2_RS16305 WP_419465672.1 3146709..3148088(-) (comFA) [Bacillus altitudinis strain TM2]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCATCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCACAGAACACCTGCTGTCGATAGAGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATAGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTCTTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.349

97.386

0.51

Multiple sequence alignment