Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   TM2_RS14625 Genome accession   NZ_AP025262
Coordinates   2814639..2815280 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2809639..2820280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS14590 (TM2_28280) - 2810767..2811198 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  TM2_RS14595 (TM2_28290) - 2811198..2811539 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  TM2_RS14600 (TM2_28300) - 2811532..2813010 (+) 1479 WP_236810047.1 Na+/H+ antiporter subunit D -
  TM2_RS14605 (TM2_28310) - 2813017..2813496 (+) 480 WP_017358944.1 Na+/H+ antiporter subunit E -
  TM2_RS14610 (TM2_28320) - 2813496..2813777 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  TM2_RS14615 (TM2_28330) mnhG 2813761..2814135 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  TM2_RS14620 (TM2_28340) - 2814226..2814615 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  TM2_RS14625 (TM2_28350) comA 2814639..2815280 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  TM2_RS14630 (TM2_28360) comP 2815361..2817667 (-) 2307 WP_236810048.1 ATP-binding protein Regulator
  TM2_RS14635 (TM2_28370) comX 2817681..2817851 (-) 171 WP_017358941.1 competence pheromone ComX -
  TM2_RS14640 (TM2_28380) - 2817829..2818752 (-) 924 WP_236810049.1 polyprenyl synthetase family protein -
  TM2_RS14645 (TM2_28390) degQ 2818904..2819044 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  TM2_RS14650 (TM2_28400) - 2819550..2819903 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=90779 TM2_RS14625 WP_007500477.1 2814639..2815280(-) (comA) [Bacillus altitudinis strain TM2]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=90779 TM2_RS14625 WP_007500477.1 2814639..2815280(-) (comA) [Bacillus altitudinis strain TM2]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATCCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTTTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment