Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | TM2_RS11240 | Genome accession | NZ_AP025262 |
| Coordinates | 2200695..2201030 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain TM2 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2195695..2206030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TM2_RS11220 (TM2_21750) | gcvT | 2196173..2197270 (-) | 1098 | WP_144739935.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| TM2_RS11225 (TM2_21760) | - | 2197830..2199500 (+) | 1671 | WP_144739932.1 | DEAD/DEAH box helicase | - |
| TM2_RS11230 (TM2_21770) | - | 2199515..2200312 (+) | 798 | WP_017367588.1 | YqhG family protein | - |
| TM2_RS11235 (TM2_21780) | - | 2200497..2200661 (+) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| TM2_RS11240 (TM2_21790) | sinR | 2200695..2201030 (+) | 336 | WP_017357978.1 | transcriptional regulator SinR | Regulator |
| TM2_RS11245 (TM2_21800) | tasA | 2201098..2201898 (-) | 801 | WP_008342195.1 | biofilm matrix protein TasA | - |
| TM2_RS11250 (TM2_21810) | sipW | 2201957..2202529 (-) | 573 | WP_017357979.1 | signal peptidase I SipW | - |
| TM2_RS11255 (TM2_21820) | tapA | 2202580..2203107 (-) | 528 | WP_099496603.1 | amyloid fiber anchoring/assembly protein TapA | - |
| TM2_RS11260 (TM2_21830) | - | 2203360..2203686 (+) | 327 | WP_039166025.1 | DUF3889 domain-containing protein | - |
| TM2_RS11265 (TM2_21840) | - | 2203721..2203915 (-) | 195 | WP_008342191.1 | YqzE family protein | - |
| TM2_RS11270 (TM2_21850) | - | 2203976..2204359 (-) | 384 | WP_041091746.1 | competence type IV pilus minor pilin ComGG | - |
| TM2_RS11275 (TM2_21860) | comGF | 2204356..2204853 (-) | 498 | WP_041091745.1 | competence type IV pilus minor pilin ComGF | - |
| TM2_RS11280 (TM2_21870) | comGE | 2204795..2205109 (-) | 315 | WP_017357984.1 | competence type IV pilus minor pilin ComGE | - |
| TM2_RS11285 (TM2_21880) | comGD | 2205093..2205539 (-) | 447 | WP_017357985.1 | competence type IV pilus minor pilin ComGD | - |
| TM2_RS11290 (TM2_21890) | comGC | 2205532..2205825 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=90767 TM2_RS11240 WP_017357978.1 2200695..2201030(+) (sinR) [Bacillus altitudinis strain TM2]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=90767 TM2_RS11240 WP_017357978.1 2200695..2201030(+) (sinR) [Bacillus altitudinis strain TM2]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |