Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SIS06_RS19060 Genome accession   NZ_CP139188
Coordinates   3608797..3609486 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain H17-16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3603797..3614486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS19025 (SIS06_19025) flgN 3603977..3604459 (-) 483 WP_283933816.1 flagellar protein FlgN -
  SIS06_RS19030 (SIS06_19030) flgM 3604475..3604741 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  SIS06_RS19035 (SIS06_19035) yvyF 3604822..3605241 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  SIS06_RS19040 (SIS06_19040) comFC 3605315..3606037 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  SIS06_RS19045 (SIS06_19045) comFB 3606001..3606297 (-) 297 WP_015483764.1 late competence protein ComFB -
  SIS06_RS19050 (SIS06_19050) comFA 3606357..3607748 (-) 1392 WP_021480715.1 ATP-dependent helicase ComFA Machinery gene
  SIS06_RS19055 (SIS06_19055) fakBA 3607854..3608699 (-) 846 WP_163117111.1 DegV family protein -
  SIS06_RS19060 (SIS06_19060) degU 3608797..3609486 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SIS06_RS19065 (SIS06_19065) degS 3609569..3610726 (-) 1158 WP_283933817.1 two-component sensor histidine kinase DegS Regulator
  SIS06_RS19070 (SIS06_19070) yvyE 3610943..3611596 (+) 654 WP_003227979.1 YigZ family protein -
  SIS06_RS19075 (SIS06_19075) tagV 3611596..3612771 (+) 1176 WP_283933818.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  SIS06_RS19080 (SIS06_19080) tagO 3612844..3613920 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=907662 SIS06_RS19060 WP_003219701.1 3608797..3609486(-) (degU) [Bacillus subtilis strain H17-16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=907662 SIS06_RS19060 WP_003219701.1 3608797..3609486(-) (degU) [Bacillus subtilis strain H17-16]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCAGAAATCCGC
AGACCATTACATATCTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1