Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SIS06_RS19050 Genome accession   NZ_CP139188
Coordinates   3606357..3607748 (-) Length   463 a.a.
NCBI ID   WP_021480715.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3601357..3612748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS19015 (SIS06_19015) flgL 3601528..3602424 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  SIS06_RS19020 (SIS06_19020) flgK 3602435..3603958 (-) 1524 WP_320535431.1 flagellar hook-associated protein FlgK -
  SIS06_RS19025 (SIS06_19025) flgN 3603977..3604459 (-) 483 WP_283933816.1 flagellar protein FlgN -
  SIS06_RS19030 (SIS06_19030) flgM 3604475..3604741 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  SIS06_RS19035 (SIS06_19035) yvyF 3604822..3605241 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  SIS06_RS19040 (SIS06_19040) comFC 3605315..3606037 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  SIS06_RS19045 (SIS06_19045) comFB 3606001..3606297 (-) 297 WP_015483764.1 late competence protein ComFB -
  SIS06_RS19050 (SIS06_19050) comFA 3606357..3607748 (-) 1392 WP_021480715.1 ATP-dependent helicase ComFA Machinery gene
  SIS06_RS19055 (SIS06_19055) fakBA 3607854..3608699 (-) 846 WP_163117111.1 DegV family protein -
  SIS06_RS19060 (SIS06_19060) degU 3608797..3609486 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SIS06_RS19065 (SIS06_19065) degS 3609569..3610726 (-) 1158 WP_283933817.1 two-component sensor histidine kinase DegS Regulator
  SIS06_RS19070 (SIS06_19070) yvyE 3610943..3611596 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52559.49 Da        Isoelectric Point: 9.7751

>NTDB_id=907661 SIS06_RS19050 WP_021480715.1 3606357..3607748(-) (comFA) [Bacillus subtilis strain H17-16]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=907661 SIS06_RS19050 WP_021480715.1 3606357..3607748(-) (comFA) [Bacillus subtilis strain H17-16]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983