Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SIS06_RS17050 Genome accession   NZ_CP139188
Coordinates   3205767..3206411 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200767..3211411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS17015 (SIS06_17015) mrpB 3201959..3202390 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  SIS06_RS17020 (SIS06_17020) mrpC 3202390..3202731 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  SIS06_RS17025 (SIS06_17025) mrpD 3202724..3204205 (+) 1482 WP_283933734.1 Na+/H+ antiporter subunit D -
  SIS06_RS17030 (SIS06_17030) mrpE 3204211..3204687 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  SIS06_RS17035 (SIS06_17035) mrpF 3204687..3204971 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  SIS06_RS17040 (SIS06_17040) mnhG 3204955..3205329 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  SIS06_RS17045 (SIS06_17045) yuxO 3205368..3205748 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  SIS06_RS17050 (SIS06_17050) comA 3205767..3206411 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  SIS06_RS17055 (SIS06_17055) comP 3206492..3208792 (-) 2301 WP_088300729.1 histidine kinase Regulator
  SIS06_RS17060 (SIS06_17060) comX 3208804..3208968 (-) 165 WP_015384519.1 competence pheromone ComX -
  SIS06_RS17065 (SIS06_17065) - 3208981..3209841 (-) 861 WP_128422373.1 polyprenyl synthetase family protein -
  SIS06_RS17070 (SIS06_17070) degQ 3210026..3210166 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  SIS06_RS17075 (SIS06_17075) - 3210388..3210513 (+) 126 WP_144500545.1 hypothetical protein -
  SIS06_RS17080 (SIS06_17080) - 3210627..3210995 (+) 369 WP_144500544.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=907654 SIS06_RS17050 WP_003220716.1 3205767..3206411(-) (comA) [Bacillus subtilis strain H17-16]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=907654 SIS06_RS17050 WP_003220716.1 3205767..3206411(-) (comA) [Bacillus subtilis strain H17-16]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1