Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABMY55_RS21015 Genome accession   NZ_CP158143
Coordinates   4334028..4334657 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain FDN-11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4329028..4339657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMY55_RS21000 (ABMY55_21000) helD 4329270..4331324 (-) 2055 WP_001593270.1 DNA helicase IV -
  ABMY55_RS21005 (ABMY55_21005) yccF 4331447..4331893 (+) 447 WP_001261231.1 YccF domain-containing protein -
  ABMY55_RS21010 (ABMY55_21010) yccS 4331903..4334065 (+) 2163 WP_000875020.1 YccS family putative transporter -
  ABMY55_RS21015 (ABMY55_21015) sxy/tfoX 4334028..4334657 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABMY55_RS21020 (ABMY55_21020) sulA 4334876..4335385 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABMY55_RS21025 (ABMY55_21025) ompA 4335742..4336782 (+) 1041 WP_000750416.1 porin OmpA -
  ABMY55_RS21030 (ABMY55_21030) matP 4336858..4337310 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABMY55_RS21035 (ABMY55_21035) ycbZ 4337496..4339256 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=907655 ABMY55_RS21015 WP_000839153.1 4334028..4334657(-) (sxy/tfoX) [Escherichia coli strain FDN-11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=907655 ABMY55_RS21015 WP_000839153.1 4334028..4334657(-) (sxy/tfoX) [Escherichia coli strain FDN-11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1