Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   TM2_RS10100 Genome accession   NZ_AP025262
Coordinates   1994382..1995017 (+) Length   211 a.a.
NCBI ID   WP_048001894.1    Uniprot ID   A0A9X0KBB7
Organism   Bacillus altitudinis strain TM2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989382..2000017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS10060 (TM2_19440) - 1989546..1990664 (+) 1119 WP_236809937.1 NADH-dependent flavin oxidoreductase -
  TM2_RS10065 (TM2_19450) - 1990714..1991220 (-) 507 WP_008344623.1 PTS sugar transporter subunit IIA -
  TM2_RS10070 (TM2_19460) - 1991389..1991808 (+) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  TM2_RS10075 (TM2_19470) - 1991830..1992282 (-) 453 WP_017359729.1 YppG family protein -
  TM2_RS10080 (TM2_19480) - 1992391..1992771 (-) 381 WP_225310452.1 YppE family protein -
  TM2_RS10085 (TM2_19490) - 1992821..1993054 (-) 234 WP_231131595.1 DUF5446 family protein -
  TM2_RS10090 sspM 1993251..1993355 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  TM2_RS10095 (TM2_19500) - 1993379..1994335 (-) 957 WP_047945924.1 DUF2515 domain-containing protein -
  TM2_RS10100 (TM2_19510) recU 1994382..1995017 (+) 636 WP_048001894.1 Holliday junction resolvase RecU Machinery gene
  TM2_RS10105 (TM2_19520) - 1995037..1997727 (+) 2691 WP_048001893.1 PBP1A family penicillin-binding protein -
  TM2_RS10110 (TM2_19530) - 1997763..1998272 (-) 510 WP_035391678.1 YpoC family protein -
  TM2_RS10115 (TM2_19540) nth 1998269..1998931 (-) 663 WP_008344602.1 endonuclease III -
  TM2_RS10120 (TM2_19550) - 1998949..1999653 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24322.62 Da        Isoelectric Point: 9.7583

>NTDB_id=90764 TM2_RS10100 WP_048001894.1 1994382..1995017(+) (recU) [Bacillus altitudinis strain TM2]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKNELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=90764 TM2_RS10100 WP_048001894.1 1994382..1995017(+) (recU) [Bacillus altitudinis strain TM2]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAAATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692

Multiple sequence alignment