Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   SIS06_RS13560 Genome accession   NZ_CP139188
Coordinates   2561941..2562978 (-) Length   345 a.a.
NCBI ID   WP_283933560.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2556941..2567978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS13510 (SIS06_13510) tasA 2557038..2557823 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  SIS06_RS13515 (SIS06_13515) sipW 2557888..2558460 (-) 573 WP_003230181.1 signal peptidase I SipW -
  SIS06_RS13520 (SIS06_13520) tapA 2558444..2559205 (-) 762 WP_283933555.1 amyloid fiber anchoring/assembly protein TapA -
  SIS06_RS13525 (SIS06_13525) yqzG 2559477..2559803 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  SIS06_RS13530 (SIS06_13530) spoIITA 2559845..2560024 (-) 180 WP_014480252.1 YqzE family protein -
  SIS06_RS13535 (SIS06_13535) comGG 2560095..2560469 (-) 375 WP_283933556.1 ComG operon protein ComGG Machinery gene
  SIS06_RS13540 (SIS06_13540) comGF 2560470..2560853 (-) 384 WP_283933557.1 ComG operon protein ComGF Machinery gene
  SIS06_RS13545 (SIS06_13545) comGE 2560879..2561226 (-) 348 WP_283933558.1 ComG operon protein 5 Machinery gene
  SIS06_RS13550 (SIS06_13550) comGD 2561210..2561641 (-) 432 WP_283933559.1 comG operon protein ComGD Machinery gene
  SIS06_RS13555 (SIS06_13555) comGC 2561631..2561927 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  SIS06_RS13560 (SIS06_13560) comGB 2561941..2562978 (-) 1038 WP_283933560.1 comG operon protein ComGB Machinery gene
  SIS06_RS13565 (SIS06_13565) comGA 2562965..2564035 (-) 1071 WP_283933561.1 competence protein ComGA Machinery gene
  SIS06_RS13570 (SIS06_13570) - 2564246..2564443 (-) 198 WP_032726162.1 hypothetical protein -
  SIS06_RS13575 (SIS06_13575) corA 2564445..2565398 (-) 954 WP_015483432.1 magnesium transporter CorA -
  SIS06_RS13580 (SIS06_13580) yqhB 2565541..2566869 (+) 1329 WP_003230150.1 hemolysin family protein -
  SIS06_RS13585 (SIS06_13585) rsbRD 2566922..2567758 (-) 837 WP_283933562.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39724.12 Da        Isoelectric Point: 9.6257

>NTDB_id=907639 SIS06_RS13560 WP_283933560.1 2561941..2562978(-) (comGB) [Bacillus subtilis strain H17-16]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQVADLTDTVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQSDQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLALFTAGIGIYYWLVFKKKSPARQMLICVRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIEAAICGSPFYEADFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=907639 SIS06_RS13560 WP_283933560.1 2561941..2562978(-) (comGB) [Bacillus subtilis strain H17-16]
ATGAAAAAGATTAGAAAAGTCTGGTCATTAAAGGATCAAGCCAGGTTATTAAAGCGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGTGGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGTCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATTTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTGGCTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTGTCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAAGCCGCTATTTG
TGGAAGCCCTTTTTATGAAGCTGATTTTTCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGAGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

97.214

93.623

0.91