Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABMY55_RS07060 Genome accession   NZ_CP158143
Coordinates   1481825..1482493 (+) Length   222 a.a.
NCBI ID   WP_001352775.1    Uniprot ID   -
Organism   Escherichia coli strain FDN-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476825..1487493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMY55_RS07030 (ABMY55_07030) yicC 1476844..1477707 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  ABMY55_RS07035 (ABMY55_07035) rph 1477834..1478550 (+) 717 WP_001247093.1 ribonuclease PH -
  ABMY55_RS07040 (ABMY55_07040) pyrE 1478616..1479257 (+) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  ABMY55_RS07045 (ABMY55_07045) slmA 1479294..1479890 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ABMY55_RS07050 (ABMY55_07050) dut 1479997..1480455 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABMY55_RS07055 (ABMY55_07055) coaBC 1480433..1481653 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABMY55_RS07060 (ABMY55_07060) radC 1481825..1482493 (+) 669 WP_001352775.1 RadC family protein Machinery gene
  ABMY55_RS07065 (ABMY55_07065) rpmB 1482710..1482946 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABMY55_RS07070 (ABMY55_07070) rpmG 1482967..1483134 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABMY55_RS07075 (ABMY55_07075) mutM 1483232..1484041 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABMY55_RS07080 (ABMY55_07080) coaD 1484080..1484559 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ABMY55_RS07085 (ABMY55_07085) waaA 1484567..1485844 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABMY55_RS07090 (ABMY55_07090) rfaQ 1486257..1487315 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25292.38 Da        Isoelectric Point: 7.9748

>NTDB_id=907613 ABMY55_RS07060 WP_001352775.1 1481825..1482493(+) (radC) [Escherichia coli strain FDN-11]
MKNNSQLMMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=907613 ABMY55_RS07060 WP_001352775.1 1481825..1482493(+) (radC) [Escherichia coli strain FDN-11]
GTGAAAAACAATTCACAGCTGATGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496