Detailed information NTG0907613

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: SIS06_RS06440
• Genome accession: NZ_CP139188
• Coordinates: 1214283..1215236 (+)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain H17-16
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1209283..1220236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIS06_RS06415 (SIS06_06415)	argF	1211115..1212074 (+)	960	WP_038828321.1	ornithine carbamoyltransferase	-
SIS06_RS06420 (SIS06_06420)	yjzC	1212160..1212339 (+)	180	WP_003245356.1	YjzC family protein	-
SIS06_RS06425 (SIS06_06425)	yjzD	1212386..1212571 (-)	186	WP_003245236.1	YjzD family protein	-
SIS06_RS06430 (SIS06_06430)	-	1212820..1213554 (+)	735	WP_003245223.1	hypothetical protein	-
SIS06_RS06435 (SIS06_06435)	-	1213636..1214193 (+)	558	WP_128747034.1	hypothetical protein	-
SIS06_RS06440 (SIS06_06440)	med	1214283..1215236 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
SIS06_RS06445 (SIS06_06445)	comZ	1215251..1215442 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
SIS06_RS06450 (SIS06_06450)	yjzB	1215472..1215708 (-)	237	WP_072173825.1	spore coat protein YjzB	-
SIS06_RS06455 (SIS06_06455)	fabH	1215873..1216811 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
SIS06_RS06460 (SIS06_06460)	fabF	1216834..1218075 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
SIS06_RS06465 (SIS06_06465)	yjaZ	1218151..1218936 (+)	786	WP_032725393.1	DUF2268 domain-containing protein	-
SIS06_RS06470 (SIS06_06470)	appD	1219127..1220113 (+)	987	WP_283934237.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=907613 SIS06_RS06440 WP_014476425.1 1214283..1215236(+) (med) [Bacillus subtilis strain H17-16]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=907613 SIS06_RS06440 WP_014476425.1 1214283..1215236(+) (med) [Bacillus subtilis strain H17-16]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAACGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAACAAAGG
CACCCTTGAGGGCGGCGACCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997