Detailed information NTG0907600

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABMY55_RS05330
• Genome accession: NZ_CP158143
• Coordinates: 1136545..1137570 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain FDN-11
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1131545..1142570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABMY55_RS05320 (ABMY55_05320)	rpmE	1133776..1133988 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABMY55_RS05325 (ABMY55_05325)	priA	1134191..1136389 (+)	2199	WP_001348093.1	primosomal protein N'	Machinery gene
ABMY55_RS05330 (ABMY55_05330)	cytR	1136545..1137570 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABMY55_RS05335 (ABMY55_05335)	ftsN	1137662..1138621 (+)	960	WP_000068834.1	cell division protein FtsN	-
ABMY55_RS05340 (ABMY55_05340)	hslV	1138714..1139244 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABMY55_RS05345 (ABMY55_05345)	hslU	1139254..1140585 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
ABMY55_RS05350 (ABMY55_05350)	menA	1140652..1141578 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABMY55_RS05355 (ABMY55_05355)	rraA	1141671..1142156 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABMY55_RS05360 (ABMY55_05360)	zapB	1142241..1142486 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=907600 ABMY55_RS05330 WP_000644904.1 1136545..1137570(+) (cytR) [Escherichia coli strain FDN-11]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=907600 ABMY55_RS05330 WP_000644904.1 1136545..1137570(+) (cytR) [Escherichia coli strain FDN-11]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628