Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   SIS06_RS01955 Genome accession   NZ_CP139188
Coordinates   367606..368004 (-) Length   132 a.a.
NCBI ID   WP_032724914.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 362606..373004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS01925 (SIS06_01925) yckA 363314..363994 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  SIS06_RS01930 (SIS06_01930) yckB 364004..364867 (-) 864 WP_283934040.1 transporter substrate-binding domain-containing protein -
  SIS06_RS01935 (SIS06_01935) - 365029..365217 (+) 189 Protein_338 hypothetical protein -
  SIS06_RS01940 (SIS06_01940) - 365253..365568 (+) 316 Protein_339 RDD family protein -
  SIS06_RS01945 (SIS06_01945) yckD 365650..365982 (+) 333 WP_015252849.1 YckD family protein -
  SIS06_RS01950 (SIS06_01950) bglC 366136..367569 (+) 1434 WP_283934041.1 6-phospho-beta-glucosidase -
  SIS06_RS01955 (SIS06_01955) nin/comJ 367606..368004 (-) 399 WP_032724914.1 DNA-entry nuclease inhibitor Regulator
  SIS06_RS01960 (SIS06_01960) nucA/comI 368031..368480 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  SIS06_RS01965 (SIS06_01965) tlpC 368648..370369 (-) 1722 WP_128746904.1 methyl-accepting chemotaxis protein TlpC -
  SIS06_RS01970 (SIS06_01970) hxlB 370479..371036 (-) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  SIS06_RS01975 (SIS06_01975) hxlA 371042..371674 (-) 633 WP_283934042.1 3-hexulose-6-phosphate synthase -
  SIS06_RS01980 (SIS06_01980) hxlR 371906..372268 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14976.96 Da        Isoelectric Point: 4.8991

>NTDB_id=907599 SIS06_RS01955 WP_032724914.1 367606..368004(-) (nin/comJ) [Bacillus subtilis strain H17-16]
MIKSWKPQELSISYHQFTVFQKDTTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=907599 SIS06_RS01955 WP_032724914.1 367606..368004(-) (nin/comJ) [Bacillus subtilis strain H17-16]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGACACTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985