Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   TM2_RS07895 Genome accession   NZ_AP025262
Coordinates   1550445..1551347 (+) Length   300 a.a.
NCBI ID   WP_025207328.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1545445..1556347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS07875 (TM2_15040) - 1546114..1547847 (+) 1734 WP_017359095.1 hypothetical protein -
  TM2_RS07880 (TM2_15050) - 1547844..1548119 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  TM2_RS07885 (TM2_15060) sucC 1548296..1549456 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  TM2_RS07890 (TM2_15070) sucD 1549479..1550381 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  TM2_RS07895 (TM2_15080) dprA 1550445..1551347 (+) 903 WP_025207328.1 DNA-processing protein DprA Machinery gene
  TM2_RS07900 (TM2_15090) topA 1551542..1553617 (+) 2076 WP_046526653.1 type I DNA topoisomerase -
  TM2_RS07905 (TM2_15100) trmFO 1553688..1554992 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  TM2_RS07910 (TM2_15110) xerC 1555055..1555972 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34083.39 Da        Isoelectric Point: 8.2830

>NTDB_id=90759 TM2_RS07895 WP_025207328.1 1550445..1551347(+) (dprA) [Bacillus altitudinis strain TM2]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRIQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGHAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=90759 TM2_RS07895 WP_025207328.1 1550445..1551347(+) (dprA) [Bacillus altitudinis strain TM2]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCATACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACATGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTTCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCGTTAGAGCAAGGAAAAGAAGTATTTGCTGTTGCAGGTTCGATCTTTGATTCTAATTCTATAGG
ACCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38

Multiple sequence alignment