Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   TM2_RS06940 Genome accession   NZ_AP025262
Coordinates   1363289..1363870 (+) Length   193 a.a.
NCBI ID   WP_236798047.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358289..1368870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS06915 (TM2_13110) - 1358954..1360132 (+) 1179 WP_051005660.1 N-acetyldiaminopimelate deacetylase -
  TM2_RS06920 (TM2_13120) - 1360183..1360425 (+) 243 WP_003211408.1 YkuS family protein -
  TM2_RS06925 (TM2_13130) - 1360450..1361259 (-) 810 WP_035700594.1 mechanosensitive ion channel family protein -
  TM2_RS06930 (TM2_13140) ahpA 1361531..1362073 (+) 543 WP_007498654.1 biofilm-specific peroxidase AhpA -
  TM2_RS06935 (TM2_13150) - 1362349..1362807 (+) 459 WP_008345174.1 TlpA disulfide reductase family protein -
  TM2_RS06940 (TM2_13160) rok 1363289..1363870 (+) 582 WP_236798047.1 hypothetical protein Regulator
  TM2_RS06945 (TM2_13170) - 1363933..1364850 (-) 918 WP_236810424.1 sigmaE regulated sporulation protein -
  TM2_RS06950 (TM2_13180) - 1364934..1365515 (+) 582 WP_046527037.1 molybdenum cofactor guanylyltransferase -
  TM2_RS06955 (TM2_13190) - 1365545..1366561 (+) 1017 WP_236810425.1 MoeB/ThiF family adenylyltransferase -
  TM2_RS06960 (TM2_13200) glp 1366571..1367845 (+) 1275 WP_236810426.1 gephyrin-like molybdotransferase Glp -
  TM2_RS06965 (TM2_13210) mobB 1367827..1368354 (+) 528 WP_017359411.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  TM2_RS06970 (TM2_13220) - 1368347..1368838 (+) 492 WP_008345161.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21875.86 Da        Isoelectric Point: 9.7309

>NTDB_id=90757 TM2_RS06940 WP_236798047.1 1363289..1363870(+) (rok) [Bacillus altitudinis strain TM2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVTDTKKEVRTERKTDSLPVLAELAAQEMRSYNQ
PAQTQSNVTTSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=90757 TM2_RS06940 WP_236798047.1 1363289..1363870(+) (rok) [Bacillus altitudinis strain TM2]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAATGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAACGAGATGCGATTTACGCAAAACTAAGAGAATTAGACCGTCAAGGTACAGGTCTCGTCACAGATACAAAAAAAG
AAGTGCGTACAGAGAGAAAAACGGATTCATTGCCTGTATTAGCTGAGCTGGCTGCACAAGAAATGAGAAGCTACAATCAG
CCTGCGCAAACGCAGTCAAACGTTACAACATCTTTAGGAACAGGTCAGCTAAATGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTAGACCTGGATCAAAGGCAGCTAAGCTTCGTGAAGCTGCAATCAAAACATTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTACCCAGAAGTGAAGAAACCTTATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

79.474

98.446

0.782

Multiple sequence alignment