Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   TM2_RS05740 Genome accession   NZ_AP025262
Coordinates   1145276..1147102 (+) Length   608 a.a.
NCBI ID   WP_282706805.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140276..1152102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS05720 (TM2_10680) - 1140538..1141203 (-) 666 WP_048003215.1 TerC family protein -
  TM2_RS05725 (TM2_10690) mecA 1141468..1142133 (+) 666 WP_008348474.1 adaptor protein MecA Regulator
  TM2_RS05730 (TM2_10700) cls 1142219..1143739 (+) 1521 WP_236810376.1 cardiolipin synthase -
  TM2_RS05735 (TM2_10710) - 1143799..1145061 (+) 1263 WP_236810377.1 competence protein CoiA -
  TM2_RS05740 (TM2_10720) pepF 1145276..1147102 (+) 1827 WP_282706805.1 oligoendopeptidase F Regulator
  TM2_RS05745 (TM2_10730) - 1147333..1147506 (-) 174 WP_008348466.1 hypothetical protein -
  TM2_RS05750 (TM2_10740) - 1147803..1148714 (-) 912 WP_007499002.1 ClpXP adapter SpxH family protein -
  TM2_RS05755 (TM2_10750) - 1148711..1149109 (-) 399 WP_007499001.1 thiol management oxidoreductase -
  TM2_RS05760 (TM2_10760) - 1149387..1150151 (-) 765 WP_008348461.1 lytic transglycosylase domain-containing protein -
  TM2_RS05765 (TM2_10770) - 1150177..1150752 (-) 576 WP_007498999.1 CYTH domain-containing protein -
  TM2_RS05770 (TM2_10780) - 1150970..1151335 (+) 366 WP_008348459.1 hypothetical protein -
  TM2_RS05775 (TM2_10790) - 1151369..1151998 (+) 630 WP_008348457.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70283.94 Da        Isoelectric Point: 5.2858

>NTDB_id=90752 TM2_RS05740 WP_282706805.1 1145276..1147102(+) (pepF) [Bacillus altitudinis strain TM2]
MTSQNNNNHLPDRSEVKEENKWRLEDIFESVDSWNKEFEAVKKEIPKLAQFKGKLAHSADVLYEALTFQDQLSEKLGKLY
TYAHMKYDEDTTNSSFQALNDKASNLFTQLSSTSAYIVPEILSIQEDKLQQFILEKEELKLYSHALEEINKERPHILSEE
QEALLAEASEPLSTSSTTFSMFNNADISFPSVKDENGEEKKITHGNFITFLNSDDREVRKNAFKAVYKTYDQYKNTLAST
LSGSIKKDNFYAKVRHYKSAREAALSRNSIPEEVYDNLIDTVHQYLPLLHRYIELRKKVLKLDEVHNYDLYTPLVKDAGM
KLTYDEAKDYMLKGLAPLGEEYVSVLKEGLENRWVDVYENKGKRSGAYSSGSYGTNPYILMNWQNNIDNLFTLAHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNHLEDKKQRLYVLNHLLEGFRGTVFRQTMFAEFEHLIHVKAQ
EGEALTPEFMTNLYYDLNKKYFGDGMVVDKEIGLEWTRIPHFYYNYYVYQYATGYSAAQALSKQILEEGKPAVERYTDFL
KAGSSDYPINVLKKAGVDMASKEPIEAACQLFEEKLKEMEELISKTGE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=90752 TM2_RS05740 WP_282706805.1 1145276..1147102(+) (pepF) [Bacillus altitudinis strain TM2]
ATGACTTCACAAAATAACAACAATCATTTACCAGACAGAAGCGAAGTAAAAGAAGAAAACAAATGGCGCCTTGAAGATAT
TTTTGAAAGTGTCGATTCTTGGAATAAGGAATTCGAAGCTGTAAAAAAAGAAATTCCGAAGCTCGCCCAATTTAAAGGCA
AGCTGGCCCATTCTGCTGATGTCTTGTATGAAGCCCTAACATTTCAGGATCAACTTTCTGAAAAGCTTGGCAAGCTTTAT
ACATATGCGCACATGAAATACGATGAAGATACAACAAATTCATCATTTCAGGCTTTAAATGATAAAGCATCCAATTTATT
TACACAGCTGTCTAGTACATCTGCCTATATTGTTCCGGAAATTTTATCTATTCAAGAAGATAAGCTGCAACAATTTATTT
TGGAAAAAGAAGAATTAAAACTTTATTCTCACGCTCTCGAAGAAATTAACAAAGAGCGTCCGCATATTTTAAGTGAGGAG
CAAGAAGCTTTATTAGCTGAAGCCTCTGAACCTTTATCAACATCATCCACTACGTTTAGTATGTTTAATAATGCAGATAT
TTCGTTCCCTTCTGTTAAGGATGAAAATGGAGAAGAAAAGAAAATTACTCATGGCAACTTCATTACCTTTTTAAACAGTG
ATGATCGTGAAGTGAGAAAGAATGCTTTTAAAGCCGTTTATAAAACGTATGATCAATATAAGAATACTTTGGCGTCTACA
CTCAGCGGCTCGATTAAAAAGGATAATTTTTATGCGAAAGTACGTCATTACAAATCTGCAAGAGAAGCAGCGTTATCACG
CAACAGTATTCCTGAAGAAGTGTATGACAATCTAATTGATACAGTTCATCAATATTTACCGTTATTACACCGCTACATTG
AATTGCGTAAAAAGGTATTAAAGCTTGATGAAGTGCACAATTATGACTTGTATACACCATTAGTAAAAGATGCTGGCATG
AAGCTGACCTATGATGAAGCAAAGGATTATATGCTGAAAGGGTTAGCGCCATTAGGAGAAGAATATGTTTCGGTATTAAA
AGAGGGACTCGAAAATCGCTGGGTAGACGTTTATGAGAATAAAGGGAAACGAAGCGGCGCGTATTCTTCTGGAAGCTATG
GTACGAATCCTTATATCTTAATGAACTGGCAAAATAATATTGATAATTTATTTACGCTGGCTCATGAATTTGGTCACTCT
GTTCATAGCTACTATACAAGAAAGCATCAGCCATATCCGTACGGAAACTACAGCATTTTTGTAGCGGAAGTAGCTTCTAC
AACAAATGAAGCATTACTAGGTGAATACTTACTCAATCATTTAGAGGACAAAAAGCAGCGCTTGTATGTGCTCAATCACT
TGTTAGAAGGATTTAGAGGGACGGTATTCAGACAAACGATGTTTGCAGAGTTCGAGCACCTGATTCATGTGAAAGCGCAA
GAAGGGGAGGCATTAACGCCAGAGTTCATGACGAACCTGTATTACGACCTGAATAAGAAGTATTTTGGCGACGGTATGGT
TGTGGATAAGGAAATCGGATTAGAATGGACGCGAATTCCGCATTTCTATTACAACTATTATGTGTATCAATACGCGACAG
GCTATAGTGCGGCTCAGGCATTAAGTAAACAAATTTTAGAAGAAGGGAAACCTGCAGTGGAGCGCTATACAGACTTCCTT
AAAGCAGGAAGCTCTGACTATCCAATCAACGTGCTGAAAAAAGCTGGTGTAGATATGGCATCGAAAGAGCCAATTGAGGC
AGCATGTCAATTGTTTGAAGAAAAATTAAAGGAAATGGAAGAGCTCATCTCAAAGACTGGTGAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.158

97.697

0.48

Multiple sequence alignment