NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	SKB18_RS08440	Genome accession	NZ_CP139163
Coordinates	1717255..1717866 (+)	Length	203 a.a.
NCBI ID	WP_223375679.1	Uniprot ID	-
Organism	Streptococcus suis strain cnzyss2-311
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1712255..1722866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SKB18_RS08420	-	1712412..1713242 (+)	831	WP_002937312.1	carbohydrate ABC transporter permease	-
SKB18_RS08425	gtfA	1713313..1714761 (+)	1449	WP_012027490.1	sucrose phosphorylase	-
SKB18_RS08430	-	1714834..1716450 (+)	1617	WP_012027489.1	alpha-glucosidase	-
SKB18_RS08435	upp	1716530..1717159 (+)	630	WP_012027487.1	uracil phosphoribosyltransferase	-
SKB18_RS08440	clpP	1717255..1717866 (+)	612	WP_223375679.1	ATP-dependent Clp protease proteolytic subunit	Regulator
SKB18_RS08445	-	1717993..1718265 (+)	273	WP_002937299.1	YlbG family protein	-
SKB18_RS08450	-	1718396..1719565 (+)	1170	WP_012775268.1	ABC transporter substrate-binding protein	-
SKB18_RS08455	-	1719781..1720668 (+)	888	WP_012027482.1	branched-chain amino acid ABC transporter permease	-
SKB18_RS08460	-	1720671..1721618 (+)	948	WP_002937293.1	branched-chain amino acid ABC transporter permease	-
SKB18_RS08465	-	1721618..1722382 (+)	765	WP_002937291.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 203 a.a. Molecular weight: 22345.73 Da Isoelectric Point: 6.7324

                                >NTDB_id=907472 SKB18_RS08440 WP_223375679.1 1717255..1717866(+) (clpP) [Streptococcus suis strain cnzyss2-311]

MSKRSNFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL

AIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI

LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide

Download Length: 612 bp

                                >NTDB_id=907472 SKB18_RS08440 WP_223375679.1 1717255..1717866(+) (clpP) [Streptococcus suis strain cnzyss2-311]

ATCTCGAAAAGGAGTAATTTTATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTC

ACGCCTTTTGAAAGACCGTATTATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGC

TTTTCCTTGATGCCCAAGACCCTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTT

GCCATTGTAGACACGATGAATTTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCAT

CATTGCATCAAGCGGTGCCAAGGGCAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAGCCAATGGGTGGAA

CTGGTGGTGGTACTCAGCAAACAGATATGGCTATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATC

TTGGCAGACAACTCAGGTAAGACAGTCAAGCAAATCCACAAGGATGCGGAACGTGATTACTGGATGTCAGCTGAAGAAAC

CTTGGCTTACGGATTTATTGACCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-199)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	92.347	96.552	0.892
clpP	Streptococcus pyogenes MGAS315	92.347	96.552	0.892
clpP	Streptococcus mutans UA159	90.306	96.552	0.872
clpP	Streptococcus thermophilus LMD-9	88.776	96.552	0.857
clpP	Streptococcus thermophilus LMG 18311	88.776	96.552	0.857
clpP	Streptococcus pneumoniae R6	89.231	96.059	0.857
clpP	Streptococcus pneumoniae Rx1	89.231	96.059	0.857
clpP	Streptococcus pneumoniae D39	89.231	96.059	0.857
clpP	Streptococcus pneumoniae TIGR4	89.231	96.059	0.857
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	83.756	97.044	0.813
clpP	Lactococcus lactis subsp. cremoris KW2	83.249	97.044	0.808
clpP	Bacillus subtilis subsp. subtilis str. 168	58.163	96.552	0.562
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.549	95.074	0.557

Detailed information NTG0907472