Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SKB18_RS05110 Genome accession   NZ_CP139163
Coordinates   1043464..1043730 (-) Length   88 a.a.
NCBI ID   WP_014635810.1    Uniprot ID   A0A2K1SXG9
Organism   Streptococcus suis strain cnzyss2-311     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038464..1048730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS05070 rpsC 1038751..1039404 (-) 654 WP_002936661.1 30S ribosomal protein S3 -
  SKB18_RS05075 rplV 1039417..1039761 (-) 345 WP_002936662.1 50S ribosomal protein L22 -
  SKB18_RS05080 rpsS 1039779..1040060 (-) 282 WP_000533766.1 30S ribosomal protein S19 -
  SKB18_RS05085 rplB 1040311..1041144 (-) 834 WP_002936663.1 50S ribosomal protein L2 -
  SKB18_RS05090 - 1041162..1041461 (-) 300 WP_004195491.1 50S ribosomal protein L23 -
  SKB18_RS05095 rplD 1041461..1042084 (-) 624 WP_004195490.1 50S ribosomal protein L4 -
  SKB18_RS05100 rplC 1042109..1042735 (-) 627 WP_011921686.1 50S ribosomal protein L3 -
  SKB18_RS05105 rpsJ 1042832..1043140 (-) 309 WP_011922546.1 30S ribosomal protein S10 -
  SKB18_RS05110 comX/sigX 1043464..1043730 (-) 267 WP_014635810.1 hypothetical protein Regulator
  SKB18_RS05115 - 1043803..1044381 (-) 579 WP_012774895.1 nucleotidyltransferase family protein -
  SKB18_RS05120 - 1044589..1044909 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  SKB18_RS05125 ruvX 1044921..1045340 (-) 420 WP_079254804.1 Holliday junction resolvase RuvX -
  SKB18_RS05130 - 1045340..1045606 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  SKB18_RS05135 spx 1045706..1046104 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  SKB18_RS05140 recA 1046340..1047491 (-) 1152 WP_011922545.1 recombinase RecA Machinery gene
  SKB18_RS05145 cinA 1047543..1048724 (-) 1182 WP_012774894.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10670.50 Da        Isoelectric Point: 9.1949

>NTDB_id=907454 SKB18_RS05110 WP_014635810.1 1043464..1043730(-) (comX/sigX) [Streptococcus suis strain cnzyss2-311]
MEFETVCLKVRNLGRLYCYFKVKFRTHIEAIIRKQESQKCKFDRLLHEDIHSLIQSPSLGNDELLMLWGLLRDYRKNLIN
DRLENMKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=907454 SKB18_RS05110 WP_014635810.1 1043464..1043730(-) (comX/sigX) [Streptococcus suis strain cnzyss2-311]
ATGGAATTTGAAACGGTTTGTTTGAAGGTTAGAAACTTAGGTAGGCTATATTGCTACTTCAAAGTTAAATTTAGAACCCA
TATCGAGGCTATAATTCGTAAACAGGAAAGTCAAAAATGTAAATTTGATCGTCTCCTCCATGAAGATATTCATAGTTTGA
TTCAATCACCGAGCTTGGGTAATGATGAGTTGCTGATGTTATGGGGTCTCCTGAGAGATTATCGAAAAAATTTAATCAAT
GACCGACTTGAAAATATGAAAAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K1SXG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

72.603

82.955

0.602
  comX/sigX Streptococcus suis isolate S10

71.233

82.955

0.591
  comX/sigX Streptococcus suis P1/7

71.233

82.955

0.591