Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   SH598_RS18070 Genome accession   NZ_CP139086
Coordinates   3698053..3698172 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3693053..3703172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS18050 (SH598_18050) - 3693404..3693916 (+) 513 Protein_3500 bacteriocin biosynthesis protein AlbG -
  SH598_RS18055 (SH598_18055) - 3693922..3695299 (-) 1378 Protein_3501 YncE family protein -
  SH598_RS18060 (SH598_18060) - 3695338..3696693 (-) 1356 WP_033574380.1 YncE family protein -
  SH598_RS18065 (SH598_18065) rapF 3696924..3698069 (+) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  SH598_RS18070 (SH598_18070) phrF 3698053..3698172 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SH598_RS18075 (SH598_18075) - 3698370..3698573 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  SH598_RS18080 (SH598_18080) - 3698587..3698790 (+) 204 WP_007407641.1 hypothetical protein -
  SH598_RS18085 (SH598_18085) - 3698825..3699010 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  SH598_RS18090 (SH598_18090) - 3699196..3699477 (+) 282 WP_007407643.1 hypothetical protein -
  SH598_RS18095 (SH598_18095) - 3699521..3700033 (+) 513 WP_031304384.1 stage II sporulation protein M -
  SH598_RS18100 (SH598_18100) - 3700624..3700842 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  SH598_RS18105 (SH598_18105) speB 3701010..3701882 (-) 873 WP_040238749.1 agmatinase -
  SH598_RS18110 (SH598_18110) speE 3701941..3702771 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=907199 SH598_RS18070 WP_015240778.1 3698053..3698172(+) (phrF) [Bacillus velezensis strain YN-2A]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=907199 SH598_RS18070 WP_015240778.1 3698053..3698172(+) (phrF) [Bacillus velezensis strain YN-2A]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462