Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SH598_RS17110 Genome accession   NZ_CP139086
Coordinates   3509377..3510066 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain YN-2A     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3504377..3515066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS17075 (SH598_17075) - 3504575..3505057 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SH598_RS17080 (SH598_17080) flgM 3505072..3505338 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SH598_RS17085 (SH598_17085) - 3505408..3505827 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SH598_RS17090 (SH598_17090) comFC 3505901..3506590 (-) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  SH598_RS17095 (SH598_17095) - 3506596..3506880 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  SH598_RS17100 (SH598_17100) comFA 3506938..3508323 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  SH598_RS17105 (SH598_17105) - 3508431..3509279 (-) 849 WP_015418336.1 DegV family protein -
  SH598_RS17110 (SH598_17110) degU 3509377..3510066 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SH598_RS17115 (SH598_17115) degS 3510143..3511306 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  SH598_RS17120 (SH598_17120) - 3511529..3512176 (+) 648 WP_003151384.1 YigZ family protein -
  SH598_RS17125 (SH598_17125) - 3512181..3513395 (+) 1215 WP_015418337.1 LCP family protein -
  SH598_RS17130 (SH598_17130) - 3513485..3514561 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=907193 SH598_RS17110 WP_003219701.1 3509377..3510066(-) (degU) [Bacillus velezensis strain YN-2A]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=907193 SH598_RS17110 WP_003219701.1 3509377..3510066(-) (degU) [Bacillus velezensis strain YN-2A]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1