Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SH598_RS17090 Genome accession   NZ_CP139086
Coordinates   3505901..3506590 (-) Length   229 a.a.
NCBI ID   WP_199776864.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3500901..3511590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS17055 (SH598_17055) fliW 3500992..3501423 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  SH598_RS17060 (SH598_17060) - 3501453..3502022 (-) 570 WP_040238821.1 DUF6470 family protein -
  SH598_RS17065 (SH598_17065) flgL 3502113..3503030 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  SH598_RS17070 (SH598_17070) flgK 3503042..3504559 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  SH598_RS17075 (SH598_17075) - 3504575..3505057 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SH598_RS17080 (SH598_17080) flgM 3505072..3505338 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SH598_RS17085 (SH598_17085) - 3505408..3505827 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SH598_RS17090 (SH598_17090) comFC 3505901..3506590 (-) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  SH598_RS17095 (SH598_17095) - 3506596..3506880 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  SH598_RS17100 (SH598_17100) comFA 3506938..3508323 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  SH598_RS17105 (SH598_17105) - 3508431..3509279 (-) 849 WP_015418336.1 DegV family protein -
  SH598_RS17110 (SH598_17110) degU 3509377..3510066 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SH598_RS17115 (SH598_17115) degS 3510143..3511306 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25235.79 Da        Isoelectric Point: 8.0779

>NTDB_id=907191 SH598_RS17090 WP_199776864.1 3505901..3506590(-) (comFC) [Bacillus velezensis strain YN-2A]
MNCLLCDSSISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=907191 SH598_RS17090 WP_199776864.1 3505901..3506590(-) (comFC) [Bacillus velezensis strain YN-2A]
CTGAATTGTTTATTGTGTGACTCATCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598