Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   SH598_RS15085 Genome accession   NZ_CP139086
Coordinates   3086006..3086146 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain YN-2A     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081006..3091146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS15060 (SH598_15060) - 3081303..3081686 (-) 384 WP_040238946.1 hotdog fold thioesterase -
  SH598_RS15065 (SH598_15065) comA 3081708..3082352 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  SH598_RS15070 (SH598_15070) comP 3082433..3084736 (-) 2304 WP_040238945.1 histidine kinase Regulator
  SH598_RS15080 (SH598_15080) comQ 3084889..3085875 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  SH598_RS15085 (SH598_15085) degQ 3086006..3086146 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SH598_RS15090 (SH598_15090) - 3086609..3086950 (+) 342 WP_015418107.1 hypothetical protein -
  SH598_RS15095 (SH598_15095) - 3086957..3088180 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  SH598_RS15100 (SH598_15100) - 3088310..3089776 (-) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -
  SH598_RS15105 (SH598_15105) - 3089794..3090345 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  SH598_RS15110 (SH598_15110) - 3090442..3090840 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=907188 SH598_RS15085 WP_003152043.1 3086006..3086146(-) (degQ) [Bacillus velezensis strain YN-2A]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=907188 SH598_RS15085 WP_003152043.1 3086006..3086146(-) (degQ) [Bacillus velezensis strain YN-2A]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891