Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SH598_RS15065 Genome accession   NZ_CP139086
Coordinates   3081708..3082352 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain YN-2A     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3076708..3087352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS15030 (SH598_15030) - 3077893..3078324 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  SH598_RS15035 (SH598_15035) - 3078324..3078665 (+) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  SH598_RS15040 (SH598_15040) - 3078658..3080139 (+) 1482 WP_015418103.1 Na+/H+ antiporter subunit D -
  SH598_RS15045 (SH598_15045) - 3080145..3080621 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  SH598_RS15050 (SH598_15050) - 3080621..3080905 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  SH598_RS15055 (SH598_15055) mnhG 3080889..3081263 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  SH598_RS15060 (SH598_15060) - 3081303..3081686 (-) 384 WP_040238946.1 hotdog fold thioesterase -
  SH598_RS15065 (SH598_15065) comA 3081708..3082352 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  SH598_RS15070 (SH598_15070) comP 3082433..3084736 (-) 2304 WP_040238945.1 histidine kinase Regulator
  SH598_RS15080 (SH598_15080) comQ 3084889..3085875 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  SH598_RS15085 (SH598_15085) degQ 3086006..3086146 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SH598_RS15090 (SH598_15090) - 3086609..3086950 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=907185 SH598_RS15065 WP_003152052.1 3081708..3082352(-) (comA) [Bacillus velezensis strain YN-2A]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=907185 SH598_RS15065 WP_003152052.1 3081708..3082352(-) (comA) [Bacillus velezensis strain YN-2A]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864