Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SH598_RS12120 Genome accession   NZ_CP139086
Coordinates   2528225..2528662 (-) Length   145 a.a.
NCBI ID   WP_015417817.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523225..2533662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS12070 (SH598_12070) sinI 2523609..2523782 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  SH598_RS12075 (SH598_12075) sinR 2523816..2524151 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  SH598_RS12080 (SH598_12080) tasA 2524199..2524984 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  SH598_RS12085 (SH598_12085) sipW 2525049..2525633 (-) 585 WP_015240205.1 signal peptidase I SipW -
  SH598_RS12090 (SH598_12090) tapA 2525605..2526276 (-) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  SH598_RS12095 (SH598_12095) - 2526535..2526864 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  SH598_RS12100 (SH598_12100) - 2526904..2527083 (-) 180 WP_003153093.1 YqzE family protein -
  SH598_RS12105 (SH598_12105) comGG 2527140..2527517 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  SH598_RS12110 (SH598_12110) comGF 2527518..2528018 (-) 501 WP_257738552.1 competence type IV pilus minor pilin ComGF -
  SH598_RS12115 (SH598_12115) comGE 2527927..2528241 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  SH598_RS12120 (SH598_12120) comGD 2528225..2528662 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  SH598_RS12125 (SH598_12125) comGC 2528652..2528960 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene
  SH598_RS12130 (SH598_12130) comGB 2528965..2530002 (-) 1038 WP_015417819.1 competence type IV pilus assembly protein ComGB Machinery gene
  SH598_RS12135 (SH598_12135) comGA 2529989..2531059 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  SH598_RS12140 (SH598_12140) - 2531252..2532202 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  SH598_RS12145 (SH598_12145) - 2532348..2533649 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16226.70 Da        Isoelectric Point: 10.1850

>NTDB_id=907169 SH598_RS12120 WP_015417817.1 2528225..2528662(-) (comGD) [Bacillus velezensis strain YN-2A]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPACTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=907169 SH598_RS12120 WP_015417817.1 2528225..2528662(-) (comGD) [Bacillus velezensis strain YN-2A]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATCCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566