Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SH598_RS12075 Genome accession   NZ_CP139086
Coordinates   2523816..2524151 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518816..2529151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS12055 (SH598_12055) gcvT 2519422..2520522 (-) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -
  SH598_RS12060 (SH598_12060) - 2520946..2522616 (+) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  SH598_RS12065 (SH598_12065) - 2522638..2523432 (+) 795 WP_007408330.1 YqhG family protein -
  SH598_RS12070 (SH598_12070) sinI 2523609..2523782 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  SH598_RS12075 (SH598_12075) sinR 2523816..2524151 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  SH598_RS12080 (SH598_12080) tasA 2524199..2524984 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  SH598_RS12085 (SH598_12085) sipW 2525049..2525633 (-) 585 WP_015240205.1 signal peptidase I SipW -
  SH598_RS12090 (SH598_12090) tapA 2525605..2526276 (-) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  SH598_RS12095 (SH598_12095) - 2526535..2526864 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  SH598_RS12100 (SH598_12100) - 2526904..2527083 (-) 180 WP_003153093.1 YqzE family protein -
  SH598_RS12105 (SH598_12105) comGG 2527140..2527517 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  SH598_RS12110 (SH598_12110) comGF 2527518..2528018 (-) 501 WP_257738552.1 competence type IV pilus minor pilin ComGF -
  SH598_RS12115 (SH598_12115) comGE 2527927..2528241 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  SH598_RS12120 (SH598_12120) comGD 2528225..2528662 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  SH598_RS12125 (SH598_12125) comGC 2528652..2528960 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=907167 SH598_RS12075 WP_003153104.1 2523816..2524151(+) (sinR) [Bacillus velezensis strain YN-2A]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=907167 SH598_RS12075 WP_003153104.1 2523816..2524151(+) (sinR) [Bacillus velezensis strain YN-2A]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991