Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGY26_RS00695 Genome accession   NZ_CP139083
Coordinates   142606..143202 (-) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain M115-8W-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 137606..148202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGY26_RS00665 (SGY26_00665) - 137675..138070 (+) 396 WP_016363285.1 hypothetical protein -
  SGY26_RS00670 (SGY26_00670) - 138464..139057 (+) 594 WP_409046668.1 TMEM175 family protein -
  SGY26_RS00675 (SGY26_00675) - 139130..139324 (-) 195 WP_003568474.1 hypothetical protein -
  SGY26_RS00680 (SGY26_00680) cydB 139351..140370 (-) 1020 WP_343582421.1 cytochrome d ubiquinol oxidase subunit II -
  SGY26_RS00685 (SGY26_00685) - 140363..141841 (-) 1479 WP_151493919.1 cytochrome ubiquinol oxidase subunit I -
  SGY26_RS00690 (SGY26_00690) rpsR 142283..142519 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  SGY26_RS00695 (SGY26_00695) ssb 142606..143202 (-) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  SGY26_RS00700 (SGY26_00700) rpsF 143233..143529 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  SGY26_RS00705 (SGY26_00705) ssb 143657..144088 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  SGY26_RS00710 (SGY26_00710) deoC 144395..145099 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  SGY26_RS00715 (SGY26_00715) gyrA 145204..147825 (-) 2622 WP_003584054.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=907097 SGY26_RS00695 WP_003568462.1 142606..143202(-) (ssb) [Lacticaseibacillus paracasei strain M115-8W-2]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=907097 SGY26_RS00695 WP_003568462.1 142606..143202(-) (ssb) [Lacticaseibacillus paracasei strain M115-8W-2]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485