Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   SIN07_RS04565 Genome accession   NZ_CP139080
Coordinates   966393..967661 (+) Length   422 a.a.
NCBI ID   WP_057772037.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain WiKim0108     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 961393..972661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIN07_RS04540 (SIN07_04540) tsf 962123..963001 (+) 879 WP_057772030.1 translation elongation factor Ts -
  SIN07_RS04545 (SIN07_04545) pyrH 963328..964050 (+) 723 WP_057772032.1 UMP kinase -
  SIN07_RS04550 (SIN07_04550) frr 964052..964615 (+) 564 WP_057772033.1 ribosome recycling factor -
  SIN07_RS04555 (SIN07_04555) - 964782..965576 (+) 795 WP_082623217.1 isoprenyl transferase -
  SIN07_RS04560 (SIN07_04560) - 965590..966375 (+) 786 WP_057772035.1 phosphatidate cytidylyltransferase -
  SIN07_RS04565 (SIN07_04565) eeP 966393..967661 (+) 1269 WP_057772037.1 RIP metalloprotease RseP Regulator
  SIN07_RS04570 (SIN07_04570) - 967683..969398 (+) 1716 WP_057772039.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46458.15 Da        Isoelectric Point: 9.3988

>NTDB_id=907078 SIN07_RS04565 WP_057772037.1 966393..967661(+) (eeP) [Pediococcus inopinatus strain WiKim0108]
MIQTIITFIIVFGILVIVHEFGHFYFAKKSGILVREFSIGMGPKIYAYSKNATTYTIRILPVGGYVRMAGLEDADEELKP
GMPVSLITGDNGKVETINTSHDTTLLNGIPVEITESDLEKELWIEGYENGDEETLKRYEVDHDASIIEADGTKVRIAPKD
VQFQSAKLWQRILTNFAGPMNNFILAIVVFALVGILQGQVPTNSNQITVIQDSVAAKAGLKSQDRIISVNDKSTKDWSDL
QDAVSSRPGKKTKMTIKRNSKKITLQITPKSVKQNGTKTGQIGIESTMTKSITARIAYGFTETWKLTTMIFALLGHMITH
GVSVNDFGGPVAIYAQTSAAAKLGFTSVLTMLAYLSLNLGIVNLIPIPALDGGKILLNFIEGIRRKPLKPETEGIITLIG
FGLLMLLMILVTWNDIQRYFLK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=907078 SIN07_RS04565 WP_057772037.1 966393..967661(+) (eeP) [Pediococcus inopinatus strain WiKim0108]
TTGATACAGACGATTATTACATTCATAATTGTATTTGGAATTCTGGTTATTGTTCATGAATTTGGTCATTTTTATTTTGC
TAAAAAATCTGGGATCTTAGTCCGTGAATTTTCAATCGGAATGGGACCTAAAATTTATGCATATTCTAAAAACGCAACAA
CGTATACAATTCGAATTTTGCCGGTAGGTGGTTATGTCCGTATGGCGGGACTGGAAGATGCAGATGAAGAATTAAAACCT
GGAATGCCAGTCAGTTTAATCACTGGTGATAATGGCAAAGTTGAAACAATCAACACAAGTCATGACACAACGCTTCTCAA
TGGTATTCCAGTTGAAATAACCGAAAGTGATTTAGAAAAGGAGCTTTGGATTGAAGGCTATGAAAATGGCGATGAGGAGA
CCCTCAAACGTTATGAAGTTGATCATGACGCGTCAATTATTGAAGCTGATGGCACAAAGGTAAGAATTGCCCCAAAAGAT
GTTCAATTTCAGTCAGCCAAATTATGGCAACGAATTTTGACTAATTTTGCAGGGCCGATGAATAATTTTATTCTGGCGAT
TGTGGTGTTTGCGCTTGTTGGTATTTTGCAAGGACAGGTTCCTACTAATTCTAATCAGATTACTGTTATTCAGGATTCCG
TTGCTGCTAAAGCCGGTTTAAAATCGCAGGATCGGATTATTTCCGTGAATGATAAAAGCACAAAAGATTGGTCAGATTTA
CAGGATGCTGTTTCTAGCCGTCCTGGTAAAAAAACTAAAATGACCATCAAACGAAATTCTAAGAAAATCACTCTGCAGAT
TACGCCCAAATCGGTTAAGCAAAATGGAACAAAGACCGGACAAATCGGGATTGAAAGTACCATGACCAAAAGTATCACTG
CCAGAATTGCTTATGGATTTACGGAAACCTGGAAGTTAACGACCATGATTTTCGCACTCCTAGGTCATATGATTACACAT
GGAGTAAGTGTGAATGATTTTGGAGGTCCAGTCGCTATTTATGCGCAAACTTCTGCTGCAGCTAAATTAGGTTTTACTTC
TGTGTTAACAATGTTAGCTTATTTATCACTGAACTTAGGGATTGTTAATTTAATCCCAATTCCCGCGTTGGATGGTGGTA
AAATTTTGCTTAATTTCATCGAAGGGATCAGACGAAAACCACTAAAACCAGAGACGGAAGGAATCATCACTCTGATTGGG
TTTGGACTCCTGATGCTTTTAATGATTCTTGTAACTTGGAATGACATTCAACGCTATTTCTTAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-407)

PDZ domain (PDZ_6)

(208-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

47.664

100

0.483
  eeP Streptococcus thermophilus LMD-9

47.43

100

0.481