Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   SNL91_RS03930 Genome accession   NZ_CP139052
Coordinates   777378..778649 (+) Length   423 a.a.
NCBI ID   WP_320531726.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain JL-1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 772378..783649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNL91_RS03900 (SNL91_03900) rpsB 772537..773316 (+) 780 WP_124891173.1 30S ribosomal protein S2 -
  SNL91_RS03905 (SNL91_03905) tsf 773407..774285 (+) 879 WP_021815939.1 translation elongation factor Ts -
  SNL91_RS03910 (SNL91_03910) pyrH 774366..775091 (+) 726 WP_003681954.1 UMP kinase -
  SNL91_RS03915 (SNL91_03915) frr 775091..775651 (+) 561 WP_164475266.1 ribosome recycling factor -
  SNL91_RS03920 (SNL91_03920) - 775778..776551 (+) 774 WP_096493763.1 isoprenyl transferase -
  SNL91_RS03925 (SNL91_03925) - 776568..777356 (+) 789 WP_124891175.1 phosphatidate cytidylyltransferase -
  SNL91_RS03930 (SNL91_03930) eeP 777378..778649 (+) 1272 WP_320531726.1 RIP metalloprotease RseP Regulator
  SNL91_RS03935 (SNL91_03935) - 778683..780404 (+) 1722 WP_015638806.1 proline--tRNA ligase -

Sequence


Protein


Download         Length: 423 a.a.        Molecular weight: 46046.47 Da        Isoelectric Point: 6.8570

>NTDB_id=906989 SNL91_RS03930 WP_320531726.1 777378..778649(+) (eeP) [Limosilactobacillus fermentum strain JL-1]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGADEDEDELRP
GMPVTLQTNEEGKVTLINASEKGTLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKNSVAAKAGLVSGDKITGVATTKVSTWND
ISQAISPNPGKKLAVTYQRNGKTYHTTVTPKATKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFTLLMILMALVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=906989 SNL91_RS03930 WP_320531726.1 777378..778649(+) (eeP) [Limosilactobacillus fermentum strain JL-1]
TTGATCATCACCATCATTACTTTTATCATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTAGTACGCGAGTTTTCGATTGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTTGGGGGCTACGTCCGCCTGGCCGGGGCCGATGAAGATGAAGACGAACTCCGTCCC
GGGATGCCGGTGACCTTGCAAACTAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGGAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTCCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCTT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTTTTGGGCGGGGTGACCAAGAATT
CGGTGGCTGCCAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCGGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAACCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCAATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGGCCACCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGCACCTCGCAGGCCACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCCGAAAAAGTGGAGGGAATTTTGAATTTGGCT
GGCTTTACCCTCTTGATGATCCTGATGGCCCTTGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains


Predicted by InterproScan.

(209-269)

(7-408)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482

  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482