Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SDC64_RS07305 Genome accession   NZ_CP139048
Coordinates   1558326..1558733 (+) Length   135 a.a.
NCBI ID   WP_320533483.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553326..1563733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS07275 (SDC64_07275) - 1553972..1554955 (+) 984 WP_243897129.1 DNA polymerase III subunit delta' -
  SDC64_RS07280 (SDC64_07280) - 1555099..1555407 (+) 309 WP_004639308.1 hypothetical protein -
  SDC64_RS07285 (SDC64_07285) - 1555730..1556074 (+) 345 WP_004639306.1 PilZ domain-containing protein -
  SDC64_RS07290 (SDC64_07290) - 1556095..1556868 (+) 774 WP_151211963.1 TatD family hydrolase -
  SDC64_RS07295 (SDC64_07295) - 1556910..1557515 (+) 606 WP_017394545.1 TetR/AcrR family transcriptional regulator -
  SDC64_RS07300 (SDC64_07300) - 1557530..1558141 (+) 612 WP_320533379.1 type II secretion system protein -
  SDC64_RS07305 (SDC64_07305) xcpV 1558326..1558733 (+) 408 WP_320533483.1 type II secretion system minor pseudopilin GspI Machinery gene
  SDC64_RS07310 (SDC64_07310) xcpW 1558739..1559458 (+) 720 WP_005080462.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SDC64_RS07315 (SDC64_07315) gspK 1559460..1560437 (+) 978 WP_320533380.1 type II secretion system minor pseudopilin GspK -
  SDC64_RS07320 (SDC64_07320) - 1560523..1561119 (+) 597 WP_017394547.1 6-carboxytetrahydropterin synthase -
  SDC64_RS07325 (SDC64_07325) ung 1561166..1561879 (+) 714 WP_075316509.1 uracil-DNA glycosylase -
  SDC64_RS07330 (SDC64_07330) - 1561876..1563000 (+) 1125 WP_171055793.1 enoyl-CoA hydratase/isomerase family protein -
  SDC64_RS07335 (SDC64_07335) tadA 1563005..1563517 (+) 513 WP_005080470.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15061.45 Da        Isoelectric Point: 8.6217

>NTDB_id=906956 SDC64_RS07305 WP_320533483.1 1558326..1558733(+) (xcpV) [Acinetobacter haemolyticus strain JS-1us]
MLLRSSVVRFNRVSGFTLLEVMVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVAMMEINKEWLDGTQSKQ
ITSQGETWQIDKKAQATISPKVQRIELQVSLFNVDQDKVEAGVGHLVFFNHQTES

Nucleotide


Download         Length: 408 bp        

>NTDB_id=906956 SDC64_RS07305 WP_320533483.1 1558326..1558733(+) (xcpV) [Acinetobacter haemolyticus strain JS-1us]
ATGCTTCTCAGATCGAGCGTTGTTCGATTTAATCGTGTCTCAGGATTTACCTTACTTGAAGTGATGGTGGCTTTGGCAAT
TTTTGCAGTGGCTGCAATCGCGCTAACAAAAATAGCCATGCAATATACGCAAGCAACCTCAAATGCAATTTTACGTACTA
AGGCTCAATTTGTTGCAATGAATGAGGTTGCAATGATGGAGATTAACAAAGAGTGGTTGGATGGAACCCAATCCAAACAA
ATCACTTCACAAGGTGAAACATGGCAAATTGATAAAAAAGCACAAGCAACGATTAGCCCCAAAGTTCAGCGGATCGAATT
ACAAGTGAGTTTATTTAACGTTGATCAAGATAAAGTTGAAGCGGGTGTTGGTCATCTAGTGTTTTTCAATCATCAGACTG
AAAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(52-110)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.167

88.889

0.704